Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1c24
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    36   0.008
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    32   0.071
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    31   0.12 
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    31   0.16 
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    31   0.22 
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    31   0.22 
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    29   0.87 
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    29   0.87 
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S...    28   1.2  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.5  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    28   1.5  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    27   2.7  
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    27   3.5  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   3.5  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   4.7  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    26   6.1  

>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
 Frame = +3

Query: 423 GRFGKISILSHKPTSKLYLQKTIS----------AHNFNVDEIKVHQLMNDHPNFIKIYF 572
           G FG++ ++    T+++Y  K IS           H      I V   +++ P  + + F
Sbjct: 311 GTFGQVYLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTSLDESPFIVGLKF 370

Query: 573 NHGFINNQVIVMDYIDCPDLFETLQIKGELSHQLVSNIIXQLCEAL 710
           +    ++  ++ DY+   +LF  LQ +G    Q     I +L  AL
Sbjct: 371 SFQTASDLYLITDYMSGGELFWHLQHEGRFPEQRAKFYIAELVLAL 416


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 32.3 bits (70), Expect = 0.071
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
 Frame = +3

Query: 438 ISILSHKPTSKLYLQKTISAHNFNVD-EIKVHQLMNDHPNFIKIYFNHGFINNQVIVMDY 614
           + +  H  T  L   K I     ++  EI + +L+  HPN +++Y       +  + ++Y
Sbjct: 26  VRLAKHAKTGDLAAIKIIPIRYASIGMEILMMRLLR-HPNILRLYDVWTDHQHMYLALEY 84

Query: 615 IDCPDLFETLQIKGELSHQLVSNIIXQLCEAL 710
           +   +LF  ++  G LS +  ++ + Q+ +A+
Sbjct: 85  VPDGELFHYIRKHGPLSEREAAHYLSQILDAV 116


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
 Frame = +3

Query: 411 KIINGRFGKISILSHKPTSKLYLQKTISAHNFN-VDEIK--VHQLMNDH-----PNFIKI 566
           +I  G +G++ +   + + K +  K I   + + + +IK  + +  N H     PN +K+
Sbjct: 533 EINRGAYGRVYLAKKRSSGKYFALKMIPKSSLDSLKKIKGLLLEKRNMHIQRYGPNTVKL 592

Query: 567 YFNHGFINNQVIVMDYIDCPDLFETLQIKGELSHQLVSNIIXQLCEAL 710
           Y+     +   +VMDY +  D    +Q  G L  Q V     +L  A+
Sbjct: 593 YYAFDSGDYLCLVMDYFNGGDCETLIQKLGPLPEQWVCQYAAELLNAI 640


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 10/106 (9%)
 Frame = +3

Query: 423 GRFGKISILSHKPTSKLYLQKTIS----------AHNFNVDEIKVHQLMNDHPNFIKIYF 572
           G FG++ ++  K T ++Y  K +S          AH     +I V     D P  + + F
Sbjct: 275 GTFGQVYLVRKKDTERVYAMKVLSKKVIVRRKEVAHTVGERDILVQTSAADSPFIVALRF 334

Query: 573 NHGFINNQVIVMDYIDCPDLFETLQIKGELSHQLVSNIIXQLCEAL 710
           +     +  +V DY+   +LF  LQ       +     I +L  AL
Sbjct: 335 SFQTPKDLYLVTDYMAGGELFWHLQKSVRFPEERAKFYIAELLLAL 380


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +3

Query: 516 EIKVHQLMNDHPNFIKIYFNHGFINNQVIVMDYIDCPDLFETLQIKGELSHQLVSNIIXQ 695
           EI++H+L N H N I  Y        + +V+++    DLF+ ++    +   +      Q
Sbjct: 61  EIQLHKLCNGHKNIIHFYNTAENPQWRWVVLEFAQGGDLFDKIEPDVGIDEDVAQFYFAQ 120

Query: 696 LCEALN 713
           L E ++
Sbjct: 121 LMEGIS 126


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
 Frame = +3

Query: 423 GRFGKISILSHKPTS-KLYLQKTISAHNFNVDEIKVHQLMNDHPNFIKIYFNHGFINNQV 599
           G FGK+ + +H  T+ K+ L+ +       +     H     HPN  ++Y      +   
Sbjct: 40  GSFGKVYLAAHLLTNTKVVLKSSCRKQAIILAREIHHHRRLLHPNITRLYEVVCTEDRIY 99

Query: 600 IVMDYIDCPDLFETLQIKGELSHQLVSNIIXQLCEAL 710
           + M+Y    +L++ +  +  L  +    I+ QLC A+
Sbjct: 100 LAMEYCPNGELYDWVAREKRLDEKTTCRIMWQLCCAI 136


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 24/105 (22%), Positives = 48/105 (45%)
 Frame = +3

Query: 396 VKTRYKIINGRFGKISILSHKPTSKLYLQKTISAHNFNVDEIKVHQLMNDHPNFIKIYFN 575
           VK   ++ +G++  I I++ +       +K   A      EI + + ++ HP  ++ +  
Sbjct: 181 VKLAVEVNSGKWYAIKIINKRKILLTSSEKR--ATEMFQREIDILKSLH-HPGVVQCHEI 237

Query: 576 HGFINNQVIVMDYIDCPDLFETLQIKGELSHQLVSNIIXQLCEAL 710
               +   IVM+Y++  DL + L   G +  Q    ++ QL E L
Sbjct: 238 FENDDELFIVMEYVEGGDLMDFLIANGSIDEQDCKPLLKQLLETL 282


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 600 IVMDYIDCPDLFETLQIKGELSHQLVSNIIXQLCEAL 710
           I M+Y D     + L++ G  S ++++ ++ Q+ EAL
Sbjct: 79  ITMEYCDGGSCLDLLKLSGTFSERVIAEVMRQVLEAL 115


>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 445

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/81 (25%), Positives = 31/81 (38%)
 Frame = +3

Query: 468 KLYLQKTISAHNFNVDEIKVHQLMNDHPNFIKIYFNHGFINNQVIVMDYIDCPDLFETLQ 647
           K+  +K IS   F  D         DHPN IK+   +       I  + +   DLF  L 
Sbjct: 189 KIIDKKKISTKRFFEDHEMTILRKLDHPNIIKVNMEYNSETQFFIFEEMVTGGDLFSYLT 248

Query: 648 IKGELSHQLVSNIIXQLCEAL 710
             G +       I+ Q+ + L
Sbjct: 249 KLGTVPEVTTLFIMFQILQGL 269


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +3

Query: 495  AHNFNVDEIKVHQLMNDHP-----NFIKIYFNHGFINNQVIVMDYI 617
            A NFN  EI+  +  N  P     N I  YFNH F N Q++   +I
Sbjct: 2282 ASNFNTLEIEFMKGSNLAPGCQFENIICPYFNHEFSNEQLLQQKFI 2327


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 549 PNFIKIYFNHGFINNQVIVMDYIDCPDLFETLQIKGELSHQLVSNIIXQLCEAL 710
           P  +  Y    + NN  + M+Y+DC  L   L+  G +   ++  II  + + L
Sbjct: 120 PYIVGFYGAFQYKNNISLCMEYMDCGSLDAILREGGPIPLDILGKIINSMVKGL 173


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
 Frame = +3

Query: 423 GRFGKISILSHKPTSKLY----LQKTISAHNFNVDEIK----VHQLMN--DHPNFIKIYF 572
           G FGK+ +  +K   K Y    L+K     N  ++ +K    V ++ N   HP  + ++ 
Sbjct: 673 GNFGKVMLAEYKVNKKFYAIKVLKKEAILKNEELESLKTEKHVFEVANKEKHPFLLNLFA 732

Query: 573 NHGFINNQVIVMDYIDCPDLFETLQ 647
           +         VM+YI   DL   +Q
Sbjct: 733 SFQTSTRVYFVMEYILGGDLMVHIQ 757


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
 Frame = +3

Query: 423 GRFGKISILSHKPTSKLYLQKTISA------HNFNVDEIKVHQLMN-DHPNFIKIYFNHG 581
           G +  +    H  T+K+Y  K ++        +F  +EI + + ++ +HPN + +     
Sbjct: 40  GTYATVREAVHIETNKMYAAKIMNKKMMEKKQDFVKNEIAILKRVSYEHPNILHLVDFFE 99

Query: 582 FINNQVIVMDYIDCPDLFETLQIKG 656
            +NN  ++ +     +LF+ +  KG
Sbjct: 100 TVNNLYLITELATGGELFDRICAKG 124


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +3

Query: 534 LMNDHPNFIKIYFNHGFINNQVIVMDYIDCPDLFETLQIKGELSHQLVSNIIXQL 698
           L N+HP+ +K        ++  IV+DY++  +LF+ +  +  L   +   +  QL
Sbjct: 553 LGNNHPHIVKYLDFVKTKHHFGIVLDYVNGGELFDYILARRRLEDSVACRLFAQL 607


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 363 TLVQFYENCKNVKTRYKIINGRFGKISILSHKPTSKLYLQKTISA--HNFNVDEIKVHQL 536
           +L++ +  C N  +RY        K+S++ H+    L L+  +S    N   ++IK  ++
Sbjct: 656 SLLKLFFKCANEGSRYNASAALSFKLSLMLHEKEEVLLLKTNVSCVLANHGYNDIKFEEM 715

Query: 537 M 539
           +
Sbjct: 716 V 716


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 334 PPPPQMLRCKRWYNFTKTAKTSKLGIK*STGVLAKYLFY 450
           PP   ++    WY+F +      +G+   +G +  Y+FY
Sbjct: 244 PPALFLIFATPWYHFIQLVLPHYIGVAGFSGAILGYVFY 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,705
Number of Sequences: 5004
Number of extensions: 57055
Number of successful extensions: 209
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)