Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1c23
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    63   2e-11
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    25   5.9  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    24   7.8  

>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 62.9 bits (146), Expect = 2e-11
 Identities = 29/62 (46%), Positives = 41/62 (66%)
 Frame = +3

Query: 219 MKSRLDRLFVLLEXXXXXXXXXXXXXQLXEVQKAHPEELHRLLGRLMTHLRSPAWETRVA 398
           M +RLDRL VLL+             Q+ ++QK HP+EL+ LLGR++ +L+S  W+TRVA
Sbjct: 1   MTTRLDRLVVLLDSGSTSVVRETAAKQIGDIQKVHPDELYNLLGRVVPYLKSKNWDTRVA 60

Query: 399 AA 404
           AA
Sbjct: 61  AA 62


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 169 RSKNEASELLNKTGLSS 219
           R KN+ASE+  K+G+SS
Sbjct: 329 RYKNDASEITRKSGVSS 345


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 92  YVSFINVFFSHKIENRLNET 33
           ++SF+N  FS + +N+L  T
Sbjct: 99  FISFLNFIFSTRFQNKLYRT 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,463,965
Number of Sequences: 5004
Number of extensions: 23741
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)