Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1c23
(404 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 33 0.11
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 31 0.46
12_02_0448 - 19163172-19163258,19163701-19163919 30 0.61
11_03_0153 + 10834388-10834813,10835731-10836012,10836153-108363... 30 0.80
11_06_0536 + 24750533-24750818,24752950-24753018,24753214-24753239 29 1.8
11_06_0456 - 23797057-23797383 29 1.8
09_04_0310 + 16578679-16580936,16581027-16581294 29 1.8
12_02_0123 - 13930138-13932471 28 3.2
03_06_0069 - 31449319-31450368 28 3.2
02_02_0415 - 9981345-9981440,9981716-9981784,9982035-9982155,998... 28 3.2
09_04_0347 + 16887182-16888504 27 4.3
07_01_0959 + 8055700-8055847,8056216-8056529,8057455-8057898 27 5.6
03_04_0084 - 17153428-17153502,17154158-17154433 27 5.6
02_05_0073 - 25602268-25603182,25603273-25604190 27 5.6
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 27 5.6
11_04_0137 + 13909204-13909315,13910002-13910999,13911058-139112... 27 7.5
11_03_0155 + 10871512-10871949,10874414-10874695,10874782-108749... 27 7.5
07_01_0756 + 5819367-5820038,5820847-5821005 27 7.5
04_04_1373 + 33025059-33025422,33025510-33025551,33025836-330260... 27 7.5
07_03_0859 + 22054087-22055421 26 9.9
06_01_0739 + 5468642-5468857,5468978-5469051,5469651-5470083 26 9.9
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 26 9.9
04_04_1216 + 31811403-31812267,31813187-31813877,31813981-318141... 26 9.9
03_02_0764 + 10990220-10992410,10992809-10993616,10994734-109949... 26 9.9
01_02_0075 + 10873789-10873871,10873883-10874420 26 9.9
>02_01_0459 +
3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 32.7 bits (71), Expect = 0.11
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 12/48 (25%)
Frame = +3
Query: 297 QLXEVQKAHPEELHRLLG------------RLMTHLRSPAWETRVAAA 404
Q+ E+ K+HP+EL+ LL R+ +LRS W+TRVAAA
Sbjct: 404 QIGEIAKSHPQELNVLLKKDICIIIILRRKRVSPYLRSKNWDTRVAAA 451
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 30.7 bits (66), Expect = 0.46
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 284 SGGEAARRGPESPSRGVTPA--PRQTDDTSPLASLGDKSR 397
S ARRGP+SP R V+PA PR S GD+SR
Sbjct: 332 SPASPARRGPQSPQRRVSPAQSPRYQPPLRK-PSTGDRSR 370
>12_02_0448 - 19163172-19163258,19163701-19163919
Length = 101
Score = 30.3 bits (65), Expect = 0.61
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 230 IGSSFRLAGGRSGLGYKASGGEAARRGPESPSRGVTPAP 346
+G GG+S LGY GGEA + E P+ PAP
Sbjct: 1 MGRGVSSGGGQSSLGYLFGGGEAP-KSAEKPAPVQKPAP 38
>11_03_0153 +
10834388-10834813,10835731-10836012,10836153-10836322,
10836431-10836528,10836770-10838133
Length = 779
Score = 29.9 bits (64), Expect = 0.80
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +1
Query: 85 ETYSFPIRSHVCDFQKFCIR**YVLIKRRSKNEASELLNKTGLSS*SRDWIVFSSC 252
+TY+ P RS V D + CI Y LI +S+LL KT D S C
Sbjct: 244 DTYNPPFRSCVVDGKASCIMCAYTLINGVPACASSDLLTKTVRGEWKLDGYTASDC 299
>11_06_0536 + 24750533-24750818,24752950-24753018,24753214-24753239
Length = 126
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 233 GSSFRLAGGRSGLGYKASGGEAARRGPESPSRGVTP 340
G R AG G+G +A GG A R P P+RG P
Sbjct: 14 GGVGRRAGCSGGVGRRAGGGVARR--PRRPARGQRP 47
>11_06_0456 - 23797057-23797383
Length = 108
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Frame = +2
Query: 233 GSSFRLAGGRSGLGYKASGGEAARRGPESPS----RGVTPAP 346
G GG+S LGY GGE A P+ + TPAP
Sbjct: 4 GRGVSSGGGQSSLGYLFGGGETAPAAKAKPAAAAEKETTPAP 45
>09_04_0310 + 16578679-16580936,16581027-16581294
Length = 841
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 245 RLAGGRSGLGYKASGGEAARRGPESPSRGVTPAPRQTDDTSPLA 376
R AG + A+GG+ A R P +P GV + D+ +A
Sbjct: 124 RAAGSGAAAAAAAAGGKPASRAPGAPPGGVVLVSKDPDNIREIA 167
>12_02_0123 - 13930138-13932471
Length = 777
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 229 DWIVFSSCWRPERARLQGE 285
DWIVFSS RPE+ ++G+
Sbjct: 584 DWIVFSSTGRPEKDIVKGK 602
>03_06_0069 - 31449319-31450368
Length = 349
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 281 ASGGEAARRGPESPSRGVTPAPRQTDDTSPLASLG 385
A G AA P+S R VTP P D + +LG
Sbjct: 201 AGAGTAASLWPQSAPRPVTPPPPHMDSQLGMGTLG 235
>02_02_0415 -
9981345-9981440,9981716-9981784,9982035-9982155,
9982441-9982622,9983320-9984921
Length = 689
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +2
Query: 230 IGSSFRLAG--GRSGLGYKASGGEAARRGPESPSRG 331
+G + R AG GR G G G RRG + P+RG
Sbjct: 72 VGVATREAGTAGRHGRGRHGGGARPWRRGEDRPARG 107
>09_04_0347 + 16887182-16888504
Length = 440
Score = 27.5 bits (58), Expect = 4.3
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 203 RPACHHEVAIGSSFRLAGGRSGLGYKA-SGGEAARRGPESPSRGVTPAPRQTDDTSPLA 376
RPA + A ++ AGG + G A + EAAR SPS TP P + S A
Sbjct: 5 RPAEEADAAAAAA-AAAGGSASEGSDAEASAEAARGHGSSPSPSKTPPPANPNPKSAAA 62
>07_01_0959 + 8055700-8055847,8056216-8056529,8057455-8057898
Length = 301
Score = 27.1 bits (57), Expect = 5.6
Identities = 20/57 (35%), Positives = 23/57 (40%)
Frame = +2
Query: 227 AIGSSFRLAGGRSGLGYKASGGEAARRGPESPSRGVTPAPRQTDDTSPLASLGDKSR 397
A+G S R G G A GGE RR P P +P P S L L D +
Sbjct: 109 ALGGSGGAEAKRRG-GAAALGGERRRRYPHPPPPSFSPPPPSL--ISDLCDLSDAEK 162
>03_04_0084 - 17153428-17153502,17154158-17154433
Length = 116
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 254 GGRSGLGYKASGGEAARRGPESPSRGVTPAP 346
GG+S LGY G EA + + P+ PAP
Sbjct: 9 GGQSSLGYLFGGNEAPKPAAK-PAPAAAPAP 38
>02_05_0073 - 25602268-25603182,25603273-25604190
Length = 610
Score = 27.1 bits (57), Expect = 5.6
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +2
Query: 260 RSGLGYKASGGEAARRGPESPSR---GVTPAP 346
RSG ++SGG +RR SP R GV+PAP
Sbjct: 169 RSGSRERSSGG-GSRRASRSPGRRAEGVSPAP 199
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +2
Query: 239 SFRLAGGRSGLGYKASGGEAARRGPESPS 325
SFR +GGR G G GG A GP S S
Sbjct: 155 SFRSSGGRPGFGRGGGGGFGA--GPTSSS 181
>11_04_0137 +
13909204-13909315,13910002-13910999,13911058-13911267,
13911522-13912056,13912154-13912461
Length = 720
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 260 RSGLGYKASGGEAARRGPESPSRGVTPAPRQT 355
RSG G EAA + PS +TPAP T
Sbjct: 516 RSGPSSSRRGYEAAHTSHDRPSFQLTPAPEYT 547
>11_03_0155 +
10871512-10871949,10874414-10874695,10874782-10874951,
10875068-10875165,10875775-10877135
Length = 782
Score = 26.6 bits (56), Expect = 7.5
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +1
Query: 79 INETYSFPIRSHVCDFQKFCIR**YVLIKRRSKNEASELLNKTGLSS*SRDWIVFSSC 252
+ +TY+ P RS V D + CI Y I ++LL KT D + S C
Sbjct: 246 LEDTYNPPFRSCVVDAKATCIMCAYTGINGVPACANADLLTKTVRGDWGLDGYIASDC 303
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +2
Query: 257 GRSGLGYKASGGEAARRGPESPSRGVTPAPR 349
GR G G + GG RRGP P +
Sbjct: 22 GRGGRGDRGRGGRGGRRGPRQEEEKWVPVTK 52
>04_04_1373 +
33025059-33025422,33025510-33025551,33025836-33026054,
33026145-33026384,33026483-33027508,33027770-33028545
Length = 888
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -1
Query: 221 HDDKPVLFKSSLASFFDLRLIKTYYYRIQNF*KSQT*ERIGKEYVSFINVF 69
HD + + +D L+ TYYY + F S G Y+ +N+F
Sbjct: 672 HDILQIFYVEPFIELYDSHLMSTYYYYLSGFAFSTK----GSLYIYGVNLF 718
>07_03_0859 + 22054087-22055421
Length = 444
Score = 26.2 bits (55), Expect = 9.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 296 AARRGPESPSRGVTPAPRQTDDTSPLASLGD 388
AA+ +PS PAP T PLA L D
Sbjct: 24 AAKPNAATPSPAARPAPTPTPTPPPLAVLSD 54
>06_01_0739 + 5468642-5468857,5468978-5469051,5469651-5470083
Length = 240
Score = 26.2 bits (55), Expect = 9.9
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Frame = +2
Query: 212 CHHEVAIGSSFRLAGGRSGLGYKASGGEAARRGP---ESPSRGVTPAPRQTDDTSP 370
C H + G + GG G G + G R P +P+ P P+ D+ P
Sbjct: 180 CEHHLGKGRMRSVTGGGGGRGGASQLGRTEHRPPATARNPAAAAAPPPK-ADEPGP 234
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 26.2 bits (55), Expect = 9.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 302 RRGPESPSRGVTPAPRQTDDTSPLASLGDK 391
R P SRG + PR+ + TSP S GD+
Sbjct: 203 RPPPGGRSRGRSRHPRKAESTSPSISGGDR 232
>04_04_1216 +
31811403-31812267,31813187-31813877,31813981-31814131,
31814289-31814351,31814590-31814664,31814934-31815032
Length = 647
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 302 RRGPESPSRGVTPAPRQT 355
RRGP PS+ TP P +T
Sbjct: 232 RRGPAPPSQAPTPPPHRT 249
>03_02_0764 +
10990220-10992410,10992809-10993616,10994734-10994968,
10995028-10995169,10997365-10997444,10997636-10997776
Length = 1198
Score = 26.2 bits (55), Expect = 9.9
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +2
Query: 215 HHEVAIGSSFRLAGGRSGLGYKASGGEAARRGPESPSRGV 334
HH + G S AGG G G GG AA ES S+ V
Sbjct: 26 HHSQSSGGSTSRAGGGGGGGGGGGGGAAA---AESVSKAV 62
>01_02_0075 + 10873789-10873871,10873883-10874420
Length = 206
Score = 26.2 bits (55), Expect = 9.9
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +2
Query: 233 GSSFRLAGGRSGLGYKASGGEAARRGP--ESPSRGVTPAPRQ 352
GSS R GG G+ ++ GG RR P E P R+
Sbjct: 163 GSSRRRWGGGGGVDRRSEGGRGRRRRPVEEEADAAAEPGARR 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,545,537
Number of Sequences: 37544
Number of extensions: 166081
Number of successful extensions: 755
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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