Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1c23
(404 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF033104-1|AAB95091.3| 1924|Drosophila melanogaster 89B helicase... 67 7e-12
AE014297-2129|AAF55260.2| 1929|Drosophila melanogaster CG4261-PA... 64 7e-11
AE014296-166|AAN11456.1| 804|Drosophila melanogaster CG18214-PD... 30 1.4
AY052082-1|AAK93506.1| 982|Drosophila melanogaster SD03378p pro... 29 1.8
AE014134-684|AAF51056.2| 982|Drosophila melanogaster CG3964-PA,... 29 1.8
AE014134-683|AAN10363.1| 989|Drosophila melanogaster CG3964-PB,... 29 1.8
AE014296-367|AAF47577.2| 354|Drosophila melanogaster CG12023-PA... 29 2.4
Y17918-1|CAA76938.1| 1441|Drosophila melanogaster CRAG protein p... 28 4.1
BT003272-1|AAO25029.1| 1109|Drosophila melanogaster LD16921p pro... 28 4.1
AY094962-1|AAM11315.1| 1083|Drosophila melanogaster SD04240p pro... 28 4.1
AE014298-1214|AAF46397.3| 1644|Drosophila melanogaster CG12737-P... 28 4.1
AE014298-1213|AAF46398.3| 1671|Drosophila melanogaster CG12737-P... 28 4.1
AE014296-1852|AAF50133.2| 1149|Drosophila melanogaster CG7958-PB... 28 4.1
AE014296-1851|AAF50134.3| 1135|Drosophila melanogaster CG7958-PA... 28 4.1
AY071220-1|AAL48842.1| 146|Drosophila melanogaster RE26329p pro... 28 5.4
AJ243837-1|CAB55761.1| 146|Drosophila melanogaster TATA binding... 28 5.4
AJ237968-1|CAB40838.1| 146|Drosophila melanogaster TATA-binding... 28 5.4
AE014134-465|AAF51211.1| 146|Drosophila melanogaster CG3069-PA ... 28 5.4
AY061444-1|AAL28992.1| 636|Drosophila melanogaster LD38128p pro... 27 7.2
AE014296-3100|AAF49195.1| 636|Drosophila melanogaster CG3797-PA... 27 7.2
>AF033104-1|AAB95091.3| 1924|Drosophila melanogaster 89B helicase
protein.
Length = 1924
Score = 67.3 bits (157), Expect = 7e-12
Identities = 33/62 (53%), Positives = 40/62 (64%)
Frame = +3
Query: 219 MKSRLDRLFVLLEXXXXXXXXXXXXXQLXEVQKAHPEELHRLLGRLMTHLRSPAWETRVA 398
M SRLDRLF+LLE Q+ EVQK +P ELH LL RL+ +L S +WETR+A
Sbjct: 1 MTSRLDRLFILLETGSTAATRQAAAKQIGEVQKLYPHELHALLNRLVGYLHSTSWETRIA 60
Query: 399 AA 404
AA
Sbjct: 61 AA 62
>AE014297-2129|AAF55260.2| 1929|Drosophila melanogaster CG4261-PA
protein.
Length = 1929
Score = 64.1 bits (149), Expect = 7e-11
Identities = 31/59 (52%), Positives = 38/59 (64%)
Frame = +3
Query: 228 RLDRLFVLLEXXXXXXXXXXXXXQLXEVQKAHPEELHRLLGRLMTHLRSPAWETRVAAA 404
RLDRLF+LLE Q+ EVQK +P ELH LL RL+ +L S +WETR+AAA
Sbjct: 10 RLDRLFILLETGSTAATRQAAAKQIGEVQKLYPHELHALLNRLVGYLHSTSWETRIAAA 68
>AE014296-166|AAN11456.1| 804|Drosophila melanogaster CG18214-PD,
isoform D protein.
Length = 804
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 251 AGGRSGLGYKASGGEAARRGPESPSRGVTPAPRQTDDTSPLASLGDKS 394
A G G+G K S E + G ++P++G P TS ++GD S
Sbjct: 18 ADGVGGVGGKKSSLERLKCGEDTPTKGYVSLPNTPLPTSAPIAVGDPS 65
>AY052082-1|AAK93506.1| 982|Drosophila melanogaster SD03378p
protein.
Length = 982
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 251 AGGRSGLGYKASGGEAARRGPESPSRGVTPAPRQTDDTSPLASLG 385
AGG S G AS +AR P + P+PR+ +A+LG
Sbjct: 110 AGGGSAAGATASDSVSARYSPPGQKQRSPPSPRKRLTPEKVANLG 154
>AE014134-684|AAF51056.2| 982|Drosophila melanogaster CG3964-PA,
isoform A protein.
Length = 982
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 251 AGGRSGLGYKASGGEAARRGPESPSRGVTPAPRQTDDTSPLASLG 385
AGG S G AS +AR P + P+PR+ +A+LG
Sbjct: 110 AGGGSAAGATASDSVSARYSPPGQKQRSPPSPRKRLTPEKVANLG 154
>AE014134-683|AAN10363.1| 989|Drosophila melanogaster CG3964-PB,
isoform B protein.
Length = 989
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 251 AGGRSGLGYKASGGEAARRGPESPSRGVTPAPRQTDDTSPLASLG 385
AGG S G AS +AR P + P+PR+ +A+LG
Sbjct: 110 AGGGSAAGATASDSVSARYSPPGQKQRSPPSPRKRLTPEKVANLG 154
>AE014296-367|AAF47577.2| 354|Drosophila melanogaster CG12023-PA,
isoform A protein.
Length = 354
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 215 HHEVAIGSSFRLAGGRSGLGYKASGGEAARRG 310
HH VA+ + +AGG GLG EA RRG
Sbjct: 208 HHLVAVAA---VAGGGEGLGMAGGAREATRRG 236
>Y17918-1|CAA76938.1| 1441|Drosophila melanogaster CRAG protein
protein.
Length = 1441
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 254 QQDEKTIQSRLHDDKPVLFKSSLASFFD 171
Q + I S ++ DKP+LF+ ++ FD
Sbjct: 1004 QHSQSQIDSSIYSDKPILFRGQRSATFD 1031
>BT003272-1|AAO25029.1| 1109|Drosophila melanogaster LD16921p
protein.
Length = 1109
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 254 GGRSGLGYKASGGEAARRGPESPSRGVTPAPRQTDDTSP 370
GG G+GY GG A+ +G P G + +Q P
Sbjct: 436 GGMPGVGYGGVGGAASHQGQFYPGSGQSAGMQQAGGMCP 474
>AY094962-1|AAM11315.1| 1083|Drosophila melanogaster SD04240p
protein.
Length = 1083
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 254 QQDEKTIQSRLHDDKPVLFKSSLASFFD 171
Q + I S ++ DKP+LF+ ++ FD
Sbjct: 553 QHSQSQIDSSIYSDKPILFRGQRSATFD 580
>AE014298-1214|AAF46397.3| 1644|Drosophila melanogaster CG12737-PB,
isoform B protein.
Length = 1644
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 254 QQDEKTIQSRLHDDKPVLFKSSLASFFD 171
Q + I S ++ DKP+LF+ ++ FD
Sbjct: 1114 QHSQSQIDSSIYSDKPILFRGQRSATFD 1141
>AE014298-1213|AAF46398.3| 1671|Drosophila melanogaster CG12737-PA,
isoform A protein.
Length = 1671
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 254 QQDEKTIQSRLHDDKPVLFKSSLASFFD 171
Q + I S ++ DKP+LF+ ++ FD
Sbjct: 1114 QHSQSQIDSSIYSDKPILFRGQRSATFD 1141
>AE014296-1852|AAF50133.2| 1149|Drosophila melanogaster CG7958-PB,
isoform B protein.
Length = 1149
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 254 GGRSGLGYKASGGEAARRGPESPSRGVTPAPRQTDDTSP 370
GG G+GY GG A+ +G P G + +Q P
Sbjct: 476 GGMPGVGYGGVGGAASHQGQFYPGSGQSAGMQQAGGMCP 514
>AE014296-1851|AAF50134.3| 1135|Drosophila melanogaster CG7958-PA,
isoform A protein.
Length = 1135
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 254 GGRSGLGYKASGGEAARRGPESPSRGVTPAPRQTDDTSP 370
GG G+GY GG A+ +G P G + +Q P
Sbjct: 462 GGMPGVGYGGVGGAASHQGQFYPGSGQSAGMQQAGGMCP 500
>AY071220-1|AAL48842.1| 146|Drosophila melanogaster RE26329p
protein.
Length = 146
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +2
Query: 230 IGSSFRL-----AGGRSGLGYKASGGEAARRGPESPSRGVTPAPRQTDDTSPL 373
+GS+F + AGG S G + GG R +PS ++ Q +D +PL
Sbjct: 2 VGSNFGIIYHNSAGGASSHGQSSGGGGGGDRDRTTPSSHLSDFMSQLEDYTPL 54
>AJ243837-1|CAB55761.1| 146|Drosophila melanogaster TATA binding
protein asssociatedfactor 16kDa subunit, (dTAFII16
protein) protein.
Length = 146
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +2
Query: 230 IGSSFRL-----AGGRSGLGYKASGGEAARRGPESPSRGVTPAPRQTDDTSPL 373
+GS+F + AGG S G + GG R +PS ++ Q +D +PL
Sbjct: 2 VGSNFGIIYHNSAGGASSHGQSSGGGGGGDRDRTTPSSHLSDFMSQLEDYTPL 54
>AJ237968-1|CAB40838.1| 146|Drosophila melanogaster TATA-binding
protein associatedfactor TAFII16 protein.
Length = 146
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +2
Query: 230 IGSSFRL-----AGGRSGLGYKASGGEAARRGPESPSRGVTPAPRQTDDTSPL 373
+GS+F + AGG S G + GG R +PS ++ Q +D +PL
Sbjct: 2 VGSNFGIIYHNSAGGASSHGQSSGGGGGGDRDRTTPSSHLSDFMSQLEDYTPL 54
>AE014134-465|AAF51211.1| 146|Drosophila melanogaster CG3069-PA
protein.
Length = 146
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +2
Query: 230 IGSSFRL-----AGGRSGLGYKASGGEAARRGPESPSRGVTPAPRQTDDTSPL 373
+GS+F + AGG S G + GG R +PS ++ Q +D +PL
Sbjct: 2 VGSNFGIIYHNSAGGASSHGQSSGGGGGGDRDRTTPSSHLSDFMSQLEDYTPL 54
>AY061444-1|AAL28992.1| 636|Drosophila melanogaster LD38128p
protein.
Length = 636
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3
Query: 204 LVQKFTGLIFRSTFN*NILLSDTEFLKI 121
++++FT LI+ T N +ILLSD + K+
Sbjct: 100 VMERFTRLIYAGTTNVDILLSDPQVRKL 127
>AE014296-3100|AAF49195.1| 636|Drosophila melanogaster CG3797-PA
protein.
Length = 636
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3
Query: 204 LVQKFTGLIFRSTFN*NILLSDTEFLKI 121
++++FT LI+ T N +ILLSD + K+
Sbjct: 100 VMERFTRLIYAGTTNVDILLSDPQVRKL 127
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,617,925
Number of Sequences: 53049
Number of extensions: 267516
Number of successful extensions: 1197
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1191504915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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