Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1c23
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical p...    27   5.1  
Z71262-8|CAA95812.1|  302|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U88168-4|AAC24402.1|  342|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z81086-4|CAB03117.1|  342|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p...    27   6.8  

>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 254 GGRSGLGYKASGGEAARRG-PESPSRGVTPAPRQTDDTSPLAS 379
           G  S  G   S G+  R G P  PSR   P P+    T P+ +
Sbjct: 835 GAPSPSGAAGSNGKQPRYGTPAPPSRASAPTPQPLSSTMPVVA 877


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +2

Query: 263  SGLGYKASGGEAARRGPESPSRGVTPAPRQTDDTSPLASLGDKS 394
            SG G   SG E +  GP+ P     P      + S   S GDKS
Sbjct: 964  SGKGPTQSGAEGSGSGPKVPKGPGAPEITTDGEESSSTSTGDKS 1007


>Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical
           protein F47B8.14 protein.
          Length = 255

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +2

Query: 254 GGRSGLGYKASGGEAARRGPESPSRGVTPAPRQTDDTSPLASLGD 388
           GG SG G    GG+AA   P        PAP    + +P A   D
Sbjct: 27  GGYSGGG--GGGGDAAPPPPPPADAAPAPAPAPEPEAAPAAPAAD 69


>Z71262-8|CAA95812.1|  302|Caenorhabditis elegans Hypothetical
           protein F22D6.10 protein.
          Length = 302

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
 Frame = +2

Query: 257 GRSGLGYKASGGEAARRGPESP--SRGVTPAPRQTDDTSPLASLGD 388
           G  G+G   S G+   RGPE P    G    P +  D  P    G+
Sbjct: 203 GTRGVGQPGSPGQPGSRGPEGPRGQPGNMGRPGEYGDAGPAGQPGN 248


>U88168-4|AAC24402.1|  342|Caenorhabditis elegans Hypothetical
           protein K11H12.8a protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 239 SFRLAGGRSGLGYKASGGEAARRGPESPSRGVTP 340
           S R  GG+SG G + + G   R GP    R + P
Sbjct: 29  SARYGGGQSGFGSRVNQGFGVRTGPTLKERLLGP 62


>Z81086-4|CAB03117.1|  342|Caenorhabditis elegans Hypothetical
           protein F53B6.4 protein.
          Length = 342

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +2

Query: 209 ACHHEVAIGSSFRLAGGRSGLGYKASGGEAARRGPESPSRGVTPAPRQTDDTSPLASLGD 388
           A H + +  SS +   G+SG G    GG++++       +  T +  Q    S    + D
Sbjct: 106 AKHSKRSSKSSKKGTSGKSGKGSSKRGGKSSKSSKSKKVKTATTSGSQVSTVSAATGVSD 165

Query: 389 K 391
           K
Sbjct: 166 K 166


>Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical protein
            F21G4.6 protein.
          Length = 1885

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 189  TGLIFRSTFN*NILLSDTEFLKITNMRTNWK 97
            +G + +S +   + L  TEF  + N+++ WK
Sbjct: 1427 SGFVLKSPYISELFLQSTEFAHLCNLKSVWK 1457


>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
           protein B0222.9 protein.
          Length = 1217

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -1

Query: 104 IGKEYVSFINVFFSHKIENRLNETRLVISG 15
           IGKE  SFI  F S +I N    T  +ISG
Sbjct: 318 IGKEIDSFIQKFSSPQIANFATWTGAIISG 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,053,407
Number of Sequences: 27780
Number of extensions: 136825
Number of successful extensions: 664
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)