Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1c19
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.07c |srp102||signal recognition particle receptor beta ...    53   3e-08
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    51   1e-07
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    28   1.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   4.4  

>SPAC23H4.07c |srp102||signal recognition particle receptor beta
           subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
 Frame = +3

Query: 261 MGLSDSGKTLLFVRLAYSQYRQTFTSMKXNXXXXITSNXTLKIVDLPGQERLRNKFFEQH 440
           +G SDSGKT LF  L Y + + T  S++ N            +VDLPG  R +     + 
Sbjct: 43  IGPSDSGKTSLFCELIYKEKKTTVPSIEPNEAVW---KYGAWLVDLPGHPRAKRWITTKF 99

Query: 441 KS--SAKGIVFVIDSINIXXEVRDVAEYLY-TILCDPIIXGNTTPLLILCNKQDQPLXXG 611
               + K +VFV++S  I  +V +V   L+ TIL       +   LLI CNK D      
Sbjct: 100 SGNYNVKAVVFVLNSATIDRDVHEVGLMLFDTIL--KCRKHHVPHLLIACNKFDLFTAQP 157

Query: 612 XQVIKGLLEKEINLVRVTXSNQL 680
            + I+ LL+ E++ +    + QL
Sbjct: 158 AEKIQQLLKAELHNILEEKNLQL 180


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 31/113 (27%), Positives = 57/113 (50%)
 Frame = +3

Query: 261 MGLSDSGKTLLFVRLAYSQYRQTFTSMKXNXXXXITSNXTLKIVDLPGQERLRNKFFEQH 440
           +GL  +GKT +  +L  +Q   T  ++  N       N    + D+ GQ+++R   +  +
Sbjct: 27  LGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIR-PLWRHY 85

Query: 441 KSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQDQP 599
            +  KG++FV+DS +    + +  + L+ I+ D  +      LL+L NKQD P
Sbjct: 86  FTGTKGLIFVVDSAD-SNRISEARQELHRIISDREM--RDCLLLVLANKQDLP 135


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +3

Query: 162  RYITLLSLIVLAVTLIXWWIF 224
            +YI ++S+IVL +T + W++F
Sbjct: 1440 QYINIISIIVLVLTSLAWFLF 1460


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 396 LPGQERLRNKFFEQHKSSAKGIVFVIDSI-NIXXEVRDVAEYLYT 527
           L   + L N FFE+ K+  +  ++++DS+ ++  E+R + +   T
Sbjct: 440 LAEDQLLLNNFFEELKNKLESDLYLLDSVFDLVPEIRSLLQQFST 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,366
Number of Sequences: 5004
Number of extensions: 31957
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)