Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1c19
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1311 - 26039741-26039930,26040185-26040316,26040528-260406...    81   1e-15
06_03_0025 - 15577231-15577420,15577682-15577813,15578025-155781...    62   3e-10
02_01_0226 + 1476529-1476585,1477207-1477297,1478247-1478362,147...    53   2e-07
06_01_0098 + 818374-818427,818537-818627,818753-818868,818962-81...    48   5e-06
02_05_0413 + 28773869-28773925,28774045-28774135,28774515-287746...    48   7e-06
10_08_1062 + 22626262-22626318,22626404-22626494,22626601-226267...    47   1e-05
03_03_0224 + 15580944-15581036,15581630-15581770,15582385-155824...    36   0.030
07_03_1298 - 25592788-25592890,25593126-25593229,25593747-255938...    36   0.039

>08_02_1311 -
           26039741-26039930,26040185-26040316,26040528-26040676,
           26040807-26040893,26041338-26041420,26042008-26042137
          Length = 256

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 9/141 (6%)
 Frame = +3

Query: 264 GLSDSGKTLLFVRLAY-SQYRQTFTSMKXNXXXXITSNXT--------LKIVDLPGQERL 416
           GLS SGKT+LF +L   S ++ T TSM+ N    +  +          + +VD+PG  RL
Sbjct: 59  GLSGSGKTILFYQLRDGSTHQGTVTSMEQNNDTFVLHSELERRGKVKPVHVVDVPGHARL 118

Query: 417 RNKFFEQHKSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQDQ 596
           + K  E    +A GIV+V+D+ +    +   AEYLY IL    +     P+LI CNK D+
Sbjct: 119 KPKLDEVLPQAA-GIVYVVDAQDFLSTMHAAAEYLYDILTKATVVKKRVPVLIFCNKTDK 177

Query: 597 PLXXGXQVIKGLLEKEINLVR 659
                 + IK  LEKE+N +R
Sbjct: 178 VTAHSKEFIKKQLEKELNKLR 198


>06_03_0025 -
           15577231-15577420,15577682-15577813,15578025-15578173,
           15579012-15579071,15593208-15593297,15593604-15593871,
           15594517-15594608,15595355-15595441,15597333-15597440,
           15597709-15597822,15598253-15598420,15599442-15599579,
           15599699-15599908,15600986-15601237,15601965-15602111,
           15603327-15603443
          Length = 773

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 36/91 (39%), Positives = 50/91 (54%)
 Frame = +3

Query: 387 IVDLPGQERLRNKFFEQHKSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTP 566
           +VD+PG   L+ K  E    +A GIVF +D+ +    ++ VAEYLY IL    +      
Sbjct: 626 VVDVPGHAGLKPKLDEVLPQAA-GIVFAVDAQDFLSTMQVVAEYLYDILTKATVVKKRIH 684

Query: 567 LLILCNKQDQPLXXGXQVIKGLLEKEINLVR 659
           +LI CNK D+      + IK  LEKEIN +R
Sbjct: 685 VLIFCNKTDKVTAHSKEFIKKQLEKEINKLR 715


>02_01_0226 +
           1476529-1476585,1477207-1477297,1478247-1478362,
           1478834-1478893,1479000-1479065,1479847-1480047
          Length = 196

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 30/111 (27%), Positives = 58/111 (52%)
 Frame = +3

Query: 261 MGLSDSGKTLLFVRLAYSQYRQTFTSMKXNXXXXITSNXTLKIVDLPGQERLRNKFFEQH 440
           +GL  +GKT +  RL   +   T  ++  N       N    + D+ GQE+LR   ++ +
Sbjct: 23  LGLDAAGKTTILYRLHMGEVLSTVPTVGFNVEKVQYKNVVFTVWDVGGQEKLR-PLWKMY 81

Query: 441 KSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQD 593
            S++  +++V+DS++    + D  +   TI+ DP++  +   +L+  NKQD
Sbjct: 82  LSNSDALIYVVDSLD-RERIIDARQEFQTIIKDPLMANSI--ILVFANKQD 129


>06_01_0098 +
           818374-818427,818537-818627,818753-818868,818962-819087,
           819175-819357
          Length = 189

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 29/111 (26%), Positives = 56/111 (50%)
 Frame = +3

Query: 261 MGLSDSGKTLLFVRLAYSQYRQTFTSMKXNXXXXITSNXTLKIVDLPGQERLRNKFFEQH 440
           +GL  +GKT +  RL   +   +  ++  N       N    + D+ GQ++LR   + Q+
Sbjct: 22  LGLDAAGKTTILYRLHIGEVLSSIPTIGFNVEKVEYKNVAFTVWDVGGQDKLR-PLWRQY 80

Query: 441 KSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQD 593
             +A  +++V+DS++    +    E    I+ DP++  +   +L+L NKQD
Sbjct: 81  FRNADALIYVVDSMD-RERIGVAKEEFQAIIRDPLMLNSV--ILLLANKQD 128


>02_05_0413 +
           28773869-28773925,28774045-28774135,28774515-28774630,
           28775627-28775686,28775767-28775832,28776499-28776693
          Length = 194

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 29/111 (26%), Positives = 57/111 (51%)
 Frame = +3

Query: 261 MGLSDSGKTLLFVRLAYSQYRQTFTSMKXNXXXXITSNXTLKIVDLPGQERLRNKFFEQH 440
           +GL  +GKT +  +L   +   T  ++  N       N    + D+ GQE+LR   +  +
Sbjct: 23  LGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVMFTVWDVGGQEKLR-PLWRHY 81

Query: 441 KSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQD 593
            ++  G+++V+DS++     +  AE+   I+ DP++  +   +L+  NKQD
Sbjct: 82  FNNTDGLIYVVDSLDRERIGKAKAEF-QAIVNDPLMLNSV--ILVFANKQD 129


>10_08_1062 +
           22626262-22626318,22626404-22626494,22626601-22626716,
           22627035-22627094,22627204-22627269,22627726-22627914
          Length = 192

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 30/111 (27%), Positives = 55/111 (49%)
 Frame = +3

Query: 261 MGLSDSGKTLLFVRLAYSQYRQTFTSMKXNXXXXITSNXTLKIVDLPGQERLRNKFFEQH 440
           +GL  +GKT +  +L   +   T  ++  N       N    + D+ GQE+LR   +  +
Sbjct: 23  LGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLR-PLWRHY 81

Query: 441 KSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQD 593
            ++   +++V+DS++     R  AE+   I+ DP +  +   LL+  NKQD
Sbjct: 82  FNNTDALIYVVDSLDRERIGRARAEF-QAIINDPFMLNSV--LLVFANKQD 129


>03_03_0224 +
           15580944-15581036,15581630-15581770,15582385-15582493,
           15582598-15582659,15583704-15583807,15584058-15584160
          Length = 203

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 27/77 (35%), Positives = 36/77 (46%)
 Frame = +3

Query: 369 SNXTLKIVDLPGQERLRNKFFEQHKSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPII 548
           +N  L   DL GQ  LR   +E++   A  I++VID+        D    L  +L    +
Sbjct: 66  ANAKLVFWDLGGQVGLRT-IWEKYYQEAHAIIYVIDAA-AASSFEDAKSALEKVLRHEDL 123

Query: 549 XGNTTPLLILCNKQDQP 599
            G   PLLI  NKQD P
Sbjct: 124 KG--APLLIFANKQDLP 138


>07_03_1298 -
           25592788-25592890,25593126-25593229,25593747-25593808,
           25593957-25594065,25594215-25594355,25594707-25594769,
           25594974-25595084,25596140-25596457
          Length = 336

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 26/77 (33%), Positives = 36/77 (46%)
 Frame = +3

Query: 369 SNXTLKIVDLPGQERLRNKFFEQHKSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPII 548
           +N  L   DL GQ  LR   +E++   A  +++VIDS        D    L  +L    +
Sbjct: 199 ANVKLVFWDLGGQPGLRT-IWEKYYEEAHAVIYVIDSA-AASSFEDAKSALEKVLHHEDL 256

Query: 549 XGNTTPLLILCNKQDQP 599
            G   PLLI  NKQ+ P
Sbjct: 257 QG--VPLLIFANKQELP 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,096,291
Number of Sequences: 37544
Number of extensions: 176151
Number of successful extensions: 338
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)