Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1c19
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18358| Best HMM Match : Arf (HMM E-Value=0)                         44   2e-04
SB_57342| Best HMM Match : Arf (HMM E-Value=0)                         43   3e-04
SB_55155| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.030
SB_214| Best HMM Match : Arf (HMM E-Value=0)                           31   0.65 
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)            29   3.5  

>SB_18358| Best HMM Match : Arf (HMM E-Value=0)
          Length = 214

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
 Frame = +3

Query: 261 MGLSDSGKTLLFVRLAYSQYRQTFTSMKXNXXXXIT-SNXTLKIVDLPGQERLRNKFFEQ 437
           +GL  SGKT +  R  + +Y  T  +   N            K+ D+ G+E+ R   ++ 
Sbjct: 27  LGLDKSGKTSILYRNKFREYVNTVPTTAFNVETIRPFKGIRFKVWDIGGREQNR-PLWKA 85

Query: 438 HKSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQDQP 599
           +      +++V+DS +   ++ +  + L+ +L    + G   P+LI  NKQD P
Sbjct: 86  YARQTDAVIYVVDSTSAG-KLEEARDELFNLLNSAQLNG--APILIFANKQDCP 136


>SB_57342| Best HMM Match : Arf (HMM E-Value=0)
          Length = 457

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
 Frame = +3

Query: 282 KTLLFVRLAYSQYRQTFTSMKXNXXXXIT-SNXTLKIVDLPGQERLRNKFFEQHKSSAKG 458
           KT +  +L   +   T  ++  N        N T  + D+ GQ+++R + +  +   A+G
Sbjct: 122 KTTILYKLKLKETVNTVPTVAFNVETISPCKNITFSVWDIGGQDKIR-RLWRHYFQGAEG 180

Query: 459 IVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQD 593
           I+FV+DS +    + +V E L  +L    + G   P++++ NKQD
Sbjct: 181 IIFVVDSAD-KERIFEVREELTRVLQHSELNG--VPVVVVANKQD 222


>SB_55155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
 Frame = +3

Query: 261 MGLSDSGKTLLFVRLAY--SQYRQTFTSMKX-NXXXXITSNXTLKIVDLPGQERLRNKFF 431
           +GL  SGK++    L+   S  R + T  +  N     T    L I ++ G E+ R  ++
Sbjct: 172 LGLDGSGKSVFLSALSQGDSSKRPSTTKTEGFNVVCLTTDGLNLNIWEIGGDEKYR-AYW 230

Query: 432 EQHKSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQDQP 599
               +  + +V+V+DS +      +  + L ++L + ++ G   P+L++ +KQD P
Sbjct: 231 PNFIADTQLLVYVVDSSD-PDRFNESRDNLKSLLSNSLLNG--VPVLLVASKQDLP 283


>SB_214| Best HMM Match : Arf (HMM E-Value=0)
          Length = 148

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 23/78 (29%), Positives = 41/78 (52%)
 Frame = +3

Query: 393 DLPGQERLRNKFFEQHKSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLL 572
           DL G  + R + ++ +  +  GIVF+ID  +    + +  + L ++L D  +  ++ P+L
Sbjct: 26  DLGGHRQAR-RIWKDYFPAVNGIVFIIDCADF-ERLAESKKELDSLLADEQL--SSCPVL 81

Query: 573 ILCNKQDQPLXXGXQVIK 626
           IL NK D P   G   I+
Sbjct: 82  ILGNKIDIPGAVGEDYIR 99


>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
          Length = 464

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -2

Query: 476 INHKHNSLSTTLVLFKEFISQSL--LSRQIDYFQCXI-RSYXLXXIXFHRSKSLSVLRVS 306
           I H H SLSTT+V     +S ++  + R +      + RS  +  +  HRS S++++ V 
Sbjct: 310 IVHVHRSLSTTIVYVNRPLSITIVHVHRSLSITIVHVHRSLSITIVHVHRSLSITIVHVH 369

Query: 305 ES 300
            S
Sbjct: 370 RS 371



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -2

Query: 476 INHKHNSLSTTLVLFKEFISQSL--LSRQIDYFQCXI-RSYXLXXIXFHRSKSLSVLRVS 306
           I H H SLSTT+V     +S ++  ++R +      + RS  +  +  HRS S++++ V 
Sbjct: 255 IVHVHRSLSTTIVHVNRPLSITIVHVNRPLSITIVHVHRSLSITIVHVHRSLSITIVHVH 314

Query: 305 ES 300
            S
Sbjct: 315 RS 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,797,822
Number of Sequences: 59808
Number of extensions: 220877
Number of successful extensions: 437
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)