Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1c19
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78016-2|CAB01443.1|  240|Caenorhabditis elegans Hypothetical pr...    93   2e-19
U70852-7|AAK29813.1|  179|Caenorhabditis elegans Adp-ribosylatio...    53   2e-07
Z46241-6|CAA86319.1|  190|Caenorhabditis elegans Hypothetical pr...    43   2e-04
Z49967-8|CAA90255.1|  180|Caenorhabditis elegans Hypothetical pr...    41   7e-04
AL117204-5|CAB55153.1|  175|Caenorhabditis elegans Hypothetical ...    39   0.003
Z35640-1|CAA84705.1|  307|Caenorhabditis elegans Hypothetical pr...    31   0.76 
Z81587-10|CAH10780.1|  483|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z81587-9|CAB04708.2|  511|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U68264-1|AAB16979.1|   66|Caenorhabditis elegans S10-like protein.     27   9.4  

>Z78016-2|CAB01443.1|  240|Caenorhabditis elegans Hypothetical
           protein R186.3 protein.
          Length = 240

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 60/176 (34%), Positives = 88/176 (50%), Gaps = 8/176 (4%)
 Frame = +3

Query: 153 NDPRYITLLSLIVLAV-TLIXWWIFXXXXXXXXXXXXMGLSDSGKTLLFVRLA-----YS 314
           NDP  + +L+  V+ + T++   +             +GL D GKT +F +L+     Y 
Sbjct: 7   NDPTTLAVLATAVIGLLTVLLLVLKSFASSNKNRVLFVGLMDCGKTTIFTQLSQKEAEYP 66

Query: 315 QYRQTFTSMKXNXXXXITSNXTLKIVDLPGQERLRNKFFEQ--HKSSAKGIVFVIDSINI 488
              +T+TSM  N       +   +I+D PG +RLR K  E   H  S   IVFV+DS   
Sbjct: 67  TTTKTYTSMVENKITLRIKDKEKEIIDYPGNDRLRQKLIENHLHSRSLLRIVFVVDSAAF 126

Query: 489 XXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQDQPLXXGXQVIKGLLEKEINLV 656
               RDVAE  YT+  + +   +  P+LI C+KQD  L    +VI+  LEKEI L+
Sbjct: 127 SKNARDVAELFYTVALENV---DKVPILIACHKQDLSLAKTEKVIRNSLEKEIGLI 179


>U70852-7|AAK29813.1|  179|Caenorhabditis elegans Adp-ribosylation
           factor relatedprotein 1.1 protein.
          Length = 179

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 31/113 (27%), Positives = 60/113 (53%)
 Frame = +3

Query: 261 MGLSDSGKTLLFVRLAYSQYRQTFTSMKXNXXXXITSNXTLKIVDLPGQERLRNKFFEQH 440
           +GL  +GKT +  +L  ++   T  ++  N         TL + D+ GQ+++R   ++ +
Sbjct: 23  LGLDGAGKTTILYKLKLNETVNTIPTIGFNVETVTFQKITLTVWDVGGQKKIR-ALWKYY 81

Query: 441 KSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQDQP 599
             +   +VFV+DS +I   + +  E L+++L +P +    + LL+  NKQD P
Sbjct: 82  FPNTTTLVFVVDSSDI-ERIPEAKEELFSLLAEPELA--DSHLLVFANKQDMP 131


>Z46241-6|CAA86319.1|  190|Caenorhabditis elegans Hypothetical
           protein C38D4.8 protein.
          Length = 190

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
 Frame = +3

Query: 261 MGLSDSGKTLLFVRLAYSQYR--QTFTSMKXNXXXXITSNXTLKIVDLPGQERLRNKFFE 434
           +GL +SGKT +  +L   + R  Q   ++        T N +    D+ GQ + R+ + E
Sbjct: 23  VGLDNSGKTTILNQLKTPETRSQQIVPTVGHVVTNFSTQNLSFHAFDMAGQMKYRSTW-E 81

Query: 435 QHKSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQDQP 599
            +  S++G++FV+DS +    +  + + L  ++    +     P++IL NK D P
Sbjct: 82  SYFHSSQGVIFVLDSSD-RLRMELLKDELMMVMEHKDVVSRGIPIVILANKMDIP 135


>Z49967-8|CAA90255.1|  180|Caenorhabditis elegans Hypothetical
           protein F54C9.10 protein.
          Length = 180

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 30/111 (27%), Positives = 53/111 (47%)
 Frame = +3

Query: 261 MGLSDSGKTLLFVRLAYSQYRQTFTSMKXNXXXXITSNXTLKIVDLPGQERLRNKFFEQH 440
           +GL  +GKT +  RL   +   T  ++  N       N   ++ DL GQ  +R  ++  +
Sbjct: 22  LGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVEYKNLKFQVWDLGGQTSIR-PYWRCY 80

Query: 441 KSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQD 593
            ++   I++V+DS +    V    + L T+L +  + G    L +L NKQD
Sbjct: 81  YANTDAIIYVVDSAD-RDRVGISRQELATMLQEDELQG--AVLAVLANKQD 128


>AL117204-5|CAB55153.1|  175|Caenorhabditis elegans Hypothetical
           protein Y116A8C.12 protein.
          Length = 175

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 26/111 (23%), Positives = 52/111 (46%)
 Frame = +3

Query: 261 MGLSDSGKTLLFVRLAYSQYRQTFTSMKXNXXXXITSNXTLKIVDLPGQERLRNKFFEQH 440
           +GL  +GKT +  +L   Q   T  ++  N       N    + D+ GQ+++R   +  +
Sbjct: 19  LGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNIKFNVWDVGGQDKIR-PLWRHY 77

Query: 441 KSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQD 593
            +  + ++FV+D+ +    V +    L+ I+ D  +      +L+  NKQD
Sbjct: 78  YTGTQALIFVMDAAD-RDRVDEARMELHRIINDREM--KEAIILVFANKQD 125


>Z35640-1|CAA84705.1|  307|Caenorhabditis elegans Hypothetical
           protein F43D9.2 protein.
          Length = 307

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 5/116 (4%)
 Frame = +3

Query: 261 MGLSDSGKTLLFVRLA---YSQYRQTFTSMKXNXXXXITSNXTLKIV--DLPGQERLRNK 425
           +G +  GKT L  R     + ++ +    +       +  N  L++   D  GQER R  
Sbjct: 106 VGNAAVGKTCLSFRFCCGRFPEHTEATIGVDFRERSCVIENELLRVQLWDTAGQERYRQS 165

Query: 426 FFEQHKSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQD 593
               +  +   +VFV D +       D+A ++       ++  +  P +++ NK D
Sbjct: 166 IVAHYYRNVNAVVFVYD-VTCRESFNDLALWIKECEKHGLVGDSEVPRILIGNKCD 220


>Z81587-10|CAH10780.1|  483|Caenorhabditis elegans Hypothetical
           protein T06G6.3b protein.
          Length = 483

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 60  YYFXDXVSVKRKNSTXESEVVKEKIXTEPILND 158
           Y+F + + ++++N+  E EVV+EK     + ND
Sbjct: 18  YFFAESLKLQQRNNLLEMEVVEEKAANTMLRND 50


>Z81587-9|CAB04708.2|  511|Caenorhabditis elegans Hypothetical
           protein T06G6.3a protein.
          Length = 511

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 60  YYFXDXVSVKRKNSTXESEVVKEKIXTEPILND 158
           Y+F + + ++++N+  E EVV+EK     + ND
Sbjct: 18  YFFAESLKLQQRNNLLEMEVVEEKAANTMLRND 50


>U68264-1|AAB16979.1|   66|Caenorhabditis elegans S10-like protein.
          Length = 66

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = +3

Query: 393 DLPGQERLRNKFFEQHKSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLL 572
           D  GQER R      +  +   +VFV D +       D+A ++       ++  +  P +
Sbjct: 2   DTAGQERYRQSIVAHYYRNVNAVVFVYD-VTCRESFNDLALWIKECEKHGLVGDSEVPRI 60

Query: 573 ILCNK 587
           ++ NK
Sbjct: 61  LIGNK 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,081,324
Number of Sequences: 27780
Number of extensions: 173143
Number of successful extensions: 340
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)