Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1c19
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   4.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +2

Query: 455 GNCVCD*FYQYTXRSQRCSRIPI 523
           G C C   YQ     Q C+  PI
Sbjct: 245 GGCHCKPGYQADVEKQECTECPI 267


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +3

Query: 45  IF*STYYFXDXVSVKRKNSTXESEVVKEKIXTEPILNDPRYITLLSLIVLA 197
           +F ST Y      +K    T E + + E +   P+L DP +      I LA
Sbjct: 315 VFQSTQYIRH---IKSPYHTPEPDCIHELLGHMPLLADPSFAQFSQEIGLA 362



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 273 LIGPLTXLSCEEYXFERKSTXI 208
           L+  LT   CE   FE KST +
Sbjct: 407 LLHALTSGKCEHRPFEPKSTAV 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,899
Number of Sequences: 438
Number of extensions: 2393
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)