Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1c19
(681 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18770.1 68415.m02185 expressed protein 87 1e-17
At5g05670.2 68418.m00624 expressed protein 81 9e-16
At5g05670.1 68418.m00623 expressed protein 81 9e-16
At2g15310.1 68415.m01746 ADP-ribosylation factor, putative simil... 49 2e-06
At3g03120.1 68416.m00308 ADP-ribosylation factor, putative simil... 46 2e-05
At5g17060.1 68418.m01999 ADP-ribosylation factor, putative simil... 46 2e-05
At3g49870.1 68416.m05452 ADP-ribosylation factor, putative simil... 46 2e-05
At5g67560.1 68418.m08519 ADP-ribosylation factor, putative ident... 45 4e-05
At2g24765.1 68415.m02959 ADP-ribosylation factor 3 (ARF3) identi... 44 1e-04
At3g22950.1 68416.m02893 ADP-ribosylation factor, putative simil... 40 0.002
At5g52210.2 68418.m06481 ADP-ribosylation factor, putative simil... 33 0.17
At5g52210.1 68418.m06480 ADP-ribosylation factor, putative simil... 33 0.17
At2g29090.1 68415.m03536 cytochrome P450 family protein similar ... 32 0.31
At2g45700.1 68415.m05682 sterile alpha motif (SAM) domain-contai... 29 2.8
>At2g18770.1 68415.m02185 expressed protein
Length = 260
Score = 87.0 bits (206), Expect = 1e-17
Identities = 53/146 (36%), Positives = 82/146 (56%), Gaps = 10/146 (6%)
Frame = +3
Query: 264 GLSDSGKTLLFVRLAY-SQYRQTFTSMKXNXXXXI--TSNXTLK-------IVDLPGQER 413
GLS SGKT+LF +L S ++ TSM+ N + N T K ++D+PG R
Sbjct: 62 GLSGSGKTVLFYQLRDGSSHQGAVTSMEPNEGTFVLHNENNTKKGKVKPVHLIDVPGHSR 121
Query: 414 LRNKFFEQHKSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQD 593
L +K E++ A +VFV+D++ +R +EYLY IL + + N TP+L+ CNK D
Sbjct: 122 LISKL-EEYLPRAAAVVFVVDALEFLPNIRAASEYLYDILTNASVIKNKTPVLLCCNKTD 180
Query: 594 QPLXXGXQVIKGLLEKEINLVRVTXS 671
+ + I+ +EKEI+ +RV+ S
Sbjct: 181 KVTAHTKEFIRKQMEKEIDKLRVSRS 206
>At5g05670.2 68418.m00624 expressed protein
Length = 260
Score = 80.6 bits (190), Expect = 9e-16
Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 9/145 (6%)
Frame = +3
Query: 264 GLSDSGKTLLFVRLAY-SQYRQTFTSMKXNXXXXITSNXTLK--------IVDLPGQERL 416
GL+ SGKT+LF +L S ++ T TSM+ N + + K +VD+PG RL
Sbjct: 63 GLTGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSENTKKGKIKPVHLVDVPGHSRL 122
Query: 417 RNKFFEQHKSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQDQ 596
R K E+ A IVFV+D++ R +EYLY IL + + P+L+ CNK D+
Sbjct: 123 RPKL-EEFLPQAAAIVFVVDALEFLPNCRAASEYLYEILTNANVVKKKIPVLLCCNKTDK 181
Query: 597 PLXXGXQVIKGLLEKEINLVRVTXS 671
+ I+ +EKEI +R + S
Sbjct: 182 LTAHTKEFIRKQMEKEIEKLRASRS 206
>At5g05670.1 68418.m00623 expressed protein
Length = 260
Score = 80.6 bits (190), Expect = 9e-16
Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 9/145 (6%)
Frame = +3
Query: 264 GLSDSGKTLLFVRLAY-SQYRQTFTSMKXNXXXXITSNXTLK--------IVDLPGQERL 416
GL+ SGKT+LF +L S ++ T TSM+ N + + K +VD+PG RL
Sbjct: 63 GLTGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSENTKKGKIKPVHLVDVPGHSRL 122
Query: 417 RNKFFEQHKSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQDQ 596
R K E+ A IVFV+D++ R +EYLY IL + + P+L+ CNK D+
Sbjct: 123 RPKL-EEFLPQAAAIVFVVDALEFLPNCRAASEYLYEILTNANVVKKKIPVLLCCNKTDK 181
Query: 597 PLXXGXQVIKGLLEKEINLVRVTXS 671
+ I+ +EKEI +R + S
Sbjct: 182 LTAHTKEFIRKQMEKEIEKLRASRS 206
>At2g15310.1 68415.m01746 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor (GI:861205) [Chlamydomonas
reinhardtii]
Length = 205
Score = 49.2 bits (112), Expect = 2e-06
Identities = 31/111 (27%), Positives = 55/111 (49%)
Frame = +3
Query: 261 MGLSDSGKTLLFVRLAYSQYRQTFTSMKXNXXXXITSNXTLKIVDLPGQERLRNKFFEQH 440
+GL SGKT + +L + T ++ N + D+ GQE++R K + +
Sbjct: 23 VGLDGSGKTTILYKLKLGEVVTTVPTIGFNLETVEYKGINFTVWDIGGQEKIR-KLWRHY 81
Query: 441 KSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQD 593
+A+G++FV+DS + + + L+ IL D + G +L+ NKQD
Sbjct: 82 FQNAQGLIFVVDSSD-SERLSEARNELHRILTDNELEG--ACVLVFANKQD 129
>At3g03120.1 68416.m00308 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor 1; ARF 1 (GP:385340)
{Drosophila melanogaster}
Length = 192
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/111 (24%), Positives = 54/111 (48%)
Frame = +3
Query: 261 MGLSDSGKTLLFVRLAYSQYRQTFTSMKXNXXXXITSNXTLKIVDLPGQERLRNKFFEQH 440
+GL +GKT + +L + T ++ N N + D+ GQE+LR + +
Sbjct: 23 LGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLR-PLWRHY 81
Query: 441 KSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQD 593
++ G+++V+DS++ + + I+ DP + + +L+ NKQD
Sbjct: 82 FNNTDGLIYVVDSLD-RERIGKAKQEFQDIIRDPFMLNSV--ILVFANKQD 129
>At5g17060.1 68418.m01999 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor 1; ARF 1 (GP:385340)
{Drosophila melanogaster)
Length = 192
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/111 (24%), Positives = 54/111 (48%)
Frame = +3
Query: 261 MGLSDSGKTLLFVRLAYSQYRQTFTSMKXNXXXXITSNXTLKIVDLPGQERLRNKFFEQH 440
+GL +GKT + +L + T ++ N N + D+ GQE+LR + +
Sbjct: 23 LGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVMFTVWDVGGQEKLR-PLWRHY 81
Query: 441 KSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQD 593
++ G+++V+DS++ + + I+ DP + + +L+ NKQD
Sbjct: 82 FNNTDGLIYVVDSLD-RERIGKAKQEFQEIIKDPFMLNSI--ILVFANKQD 129
>At3g49870.1 68416.m05452 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor-like protein 1 (SP:P40616)
[Homo sapiens]; ARF3 ADP-RIBOSYLATION FACTOR,GP:453191
Arabidopsis thaliana; contains domain PF00025:
ADP-ribosylation factor family
Length = 184
Score = 46.0 bits (104), Expect = 2e-05
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Frame = +3
Query: 261 MGLSDSGKTLLFVRLAYSQYRQTFT-SMKXNXXXXITSNXTLKIVDLPGQERLRNKFFEQ 437
+GL ++GKT L +A Y + ++ N N T+K+ DL GQ R R+ +E+
Sbjct: 25 IGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS-MWER 83
Query: 438 HKSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQDQP 599
+ + IV+V+D+ + +E L+ +L + G PLL+L NK D+P
Sbjct: 84 YCRAVSAIVYVVDAADPDNLSVSKSE-LHDLLSKTSLNG--IPLLVLGNKIDKP 134
>At5g67560.1 68418.m08519 ADP-ribosylation factor, putative
identical to GP:15450888 ADP-ribosylation factor-like
protein {Arabidopsis thaliana]
Length = 184
Score = 45.2 bits (102), Expect = 4e-05
Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Frame = +3
Query: 261 MGLSDSGKTLLFVRLAYSQYRQTFT-SMKXNXXXXITSNXTLKIVDLPGQERLRNKFFEQ 437
+GL ++GKT L +A Y + ++ N + T+K+ DL GQ R R+ +E+
Sbjct: 25 IGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRS-MWER 83
Query: 438 HKSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQDQP 599
+ S IV+V+D+ + +E L+ +L + G PLL+L NK D+P
Sbjct: 84 YCRSVSAIVYVVDAADPDNLSVSKSE-LHDLLSKTSLNG--IPLLVLGNKIDKP 134
>At2g24765.1 68415.m02959 ADP-ribosylation factor 3 (ARF3) identical
to GP:453191 ADP-ribosylation factor 3 {Arabidopsis
thaliana}; contains domain PF00025: ADP-ribosylation
factor family
Length = 182
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/113 (25%), Positives = 55/113 (48%)
Frame = +3
Query: 261 MGLSDSGKTLLFVRLAYSQYRQTFTSMKXNXXXXITSNXTLKIVDLPGQERLRNKFFEQH 440
+GL ++GKT + RL + T ++ N +N ++ DL GQ +R ++ +
Sbjct: 23 LGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR-PYWRCY 81
Query: 441 KSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQDQP 599
+ + +++V+DS + + E + IL + + G +LI NKQD P
Sbjct: 82 FPNTQAVIYVVDSSD-TDRIGVAKEEFHAILEEDELKG--AVVLIFANKQDLP 131
>At3g22950.1 68416.m02893 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor GB:P91924 [Dugesia japonica]
Length = 183
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/111 (24%), Positives = 53/111 (47%)
Frame = +3
Query: 261 MGLSDSGKTLLFVRLAYSQYRQTFTSMKXNXXXXITSNXTLKIVDLPGQERLRNKFFEQH 440
+GL ++GKT +L + T ++ N + N ++ DL GQ+RLR + +
Sbjct: 23 VGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEVWDLGGQDRLRTSWATYY 82
Query: 441 KSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQD 593
+ + ++ VIDS + + + + L +L + + +L+ NKQD
Sbjct: 83 RGT-HAVIVVIDSTD-RARISFMKDELARLLGHEDLQNSV--ILVFANKQD 129
>At5g52210.2 68418.m06481 ADP-ribosylation factor, putative similar
to arf-related protein (ARP) (SP:Q63055){Rattus
norvegicus}; contains Pfam domain PF00025:
ADP-ribosylation factor family
Length = 205
Score = 33.1 bits (72), Expect = 0.17
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Frame = +3
Query: 261 MGLSDSGKTLLFVRLA--YS-----QYRQTFTSMKXNXXXXITSNXTLKIVDLPGQERLR 419
+G+ +GKT +L YS + + ++ N SN + DL GQ LR
Sbjct: 23 LGIDKAGKTTFLEKLKTIYSISEGLPHDRIVPTVGLNIGRIEVSNAKIVFWDLGGQPGLR 82
Query: 420 NKFFEQHKSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQD 593
+ +E++ A ++++ID+ D L L + G PLLIL NKQD
Sbjct: 83 S-IWEKYYEEAHALIYLIDAA-CPTRFEDSKSALEKALRHEDLQG--APLLILANKQD 136
>At5g52210.1 68418.m06480 ADP-ribosylation factor, putative similar
to arf-related protein (ARP) (SP:Q63055){Rattus
norvegicus}; contains Pfam domain PF00025:
ADP-ribosylation factor family
Length = 205
Score = 33.1 bits (72), Expect = 0.17
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Frame = +3
Query: 261 MGLSDSGKTLLFVRLA--YS-----QYRQTFTSMKXNXXXXITSNXTLKIVDLPGQERLR 419
+G+ +GKT +L YS + + ++ N SN + DL GQ LR
Sbjct: 23 LGIDKAGKTTFLEKLKTIYSISEGLPHDRIVPTVGLNIGRIEVSNAKIVFWDLGGQPGLR 82
Query: 420 NKFFEQHKSSAKGIVFVIDSINIXXEVRDVAEYLYTILCDPIIXGNTTPLLILCNKQD 593
+ +E++ A ++++ID+ D L L + G PLLIL NKQD
Sbjct: 83 S-IWEKYYEEAHALIYLIDAA-CPTRFEDSKSALEKALRHEDLQG--APLLILANKQD 136
>At2g29090.1 68415.m03536 cytochrome P450 family protein similar to
Cytochrome P450 88A3 (SP:O23051) [Arabidopsis thaliana];
similar to taxane 13-alpha-hydroxylase (GI:17148242)
[Taxus cuspidata].
Length = 482
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 153 NDPRYITLLSLIVLAVTLIXWWIFXXXXXXXXXXXXMGLSDSGKTLLFVRLAYSQYRQTF 332
++P ITL ++V+ V L WW+ MGL G+TL RL Y++ +F
Sbjct: 18 DEPALITLTIVVVVVVLLFKWWLHWKEQRLRLPPGSMGLPYIGETL---RL-YTENPNSF 73
Query: 333 TSMKXN 350
+ + N
Sbjct: 74 FATRQN 79
>At2g45700.1 68415.m05682 sterile alpha motif (SAM)
domain-containing protein similar to SNM1 protein [Mus
musculus] GI:7595835; contains Pfam profile PF00536: SAM
domain (Sterile alpha motif)
Length = 723
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 185 YCSSSNPHIXVDFLSKXYSSQLXIVNGPI 271
+CSSS PH +D + L NGPI
Sbjct: 65 FCSSSTPHCILDCIPSSVDCSLGDFNGPI 93
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,307,848
Number of Sequences: 28952
Number of extensions: 158678
Number of successful extensions: 317
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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