Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1c17
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   131   9e-32
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    28   1.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.8  
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces...    25   8.4  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   8.4  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  131 bits (317), Expect = 9e-32
 Identities = 63/152 (41%), Positives = 95/152 (62%), Gaps = 3/152 (1%)
 Frame = -1

Query: 486 MKAICIISGD--VHGKIYFQQESANRPLKISGYLL-NLPRGLHGFHVHEYGDTSNGCTSA 316
           ++A+ ++ GD  V G + F+Q   N  + +   L+ N      GFH+H++GD +NGCTSA
Sbjct: 2   VRAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSA 61

Query: 315 GEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVV 136
           G HFNP  + HG   A +RHVGDLGN++S    ++ +    D+V+SL+G ++IIGR++V+
Sbjct: 62  GPHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNI-KTTFSDSVISLFGANSIIGRTIVI 120

Query: 135 HTDKDDLGLTEHPLSKTTGNSDGRLGCGIIAI 40
           H  +DDLG      S  TGN+  R  CG+I I
Sbjct: 121 HAGEDDLGKGTSEESLKTGNAGARNACGVIGI 152


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -1

Query: 492 NNMKAICIISGDVHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSA- 316
           ++   I +I  D +G+I     S    LK +G + + P   HGF +  + + S+  T A 
Sbjct: 172 SSQDTIGVICVDKNGRIAVVSSSGGLLLKPAGRIGSSPIPGHGFWIESFDNKSHSSTCAV 231

Query: 315 -----GEHFNPT 295
                GEH + T
Sbjct: 232 ATSGTGEHISNT 243


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/43 (25%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +1

Query: 1    LLVKRVKAMTSFTYGNYSASQTAV-RIAGCFAQRMLGKAQIVF 126
            L+++RV +++   YGN   +QTA+  +A   + ++L +  +++
Sbjct: 3653 LIMRRVASLSQVAYGNLPVNQTAIDYLAQASSSKVLAQMDVLW 3695


>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 183

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -1

Query: 276 PDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKDDLGLT 106
           P  E+R  G +   ++   NS ++ N   ++  + GP N++  +L   T  DD+  T
Sbjct: 64  PSQELRD-GIVRENQTKPSNSNSQSNGAISIRGIAGPTNVVIENLAPGTSSDDVAAT 119


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 491 FLNYTILILSKQSPYSQQRLEKRRRDLTKFDELKGSLSGTLLN 619
           F  Y   I  + + YS+Q+    RR L K  +L+GS+  + +N
Sbjct: 75  FQPYLHEISQEYARYSKQKRASLRRYLEKHGKLEGSMKESSIN 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,320
Number of Sequences: 5004
Number of extensions: 65705
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)