Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1c13
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...   206   8e-54
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    33   0.10 
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    33   0.10 
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    33   0.10 
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    29   2.2  
AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AF026206-4|AAK39309.1|  535|Caenorhabditis elegans Hypothetical ...    27   6.8  
AF026206-3|AAK39308.1|  518|Caenorhabditis elegans Hypothetical ...    27   6.8  
AF026206-2|AAT92054.1|  552|Caenorhabditis elegans Hypothetical ...    27   6.8  
AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical ...    27   9.0  
AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical ...    27   9.0  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score =  206 bits (503), Expect = 8e-54
 Identities = 100/161 (62%), Positives = 120/161 (74%), Gaps = 2/161 (1%)
 Frame = +3

Query: 42  MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 221
           MTNSKG RRGTR +FAR FR HG   LSTY   YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1   MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60

Query: 222 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 401
           TGR++NVT  A+G+IVNKRVRG I+PKRINIR+EH+K SKCR DFL RVK N+   K AK
Sbjct: 61  TGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAK 120

Query: 402 AAGKTV-NLKRQPAPPKAAH-IVSGTEKPVLLAPIPYEFVA 518
           +AG+ V  LKR P  P+ AH + +   +P LLAP+ +E VA
Sbjct: 121 SAGQPVPALKRLPVAPRGAHTVTTQNNEPELLAPLRFEIVA 161


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 226 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 89
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 226 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 89
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 226 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 89
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 420 NLKRQPAPPKAAHIVSGTE 476
           NL+R+PAPPK  H+ S  E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480


>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +2

Query: 176 WCSSKGYATQSIPWKDRSRVQRYCSRSRCDCQQACSRKDYTETH 307
           WC S    T +    + +++    ++  C C Q C +  YT T+
Sbjct: 503 WCDSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQYTTTY 546


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +2

Query: 176 WCSSKGYATQSIPWKDRSRVQRYCSRSRCDCQQACSRKDYTETH 307
           WC S    T +    + +++    ++  C C Q C +  YT T+
Sbjct: 503 WCDSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQYTTTY 546


>AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical
           protein Y80D3A.9 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 485 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 399
           DG LS  D+    RG+WL +   G  G L
Sbjct: 39  DGMLSGVDEKDVARGTWLGMDAHGKVGML 67


>Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical
           protein F49E2.5d protein.
          Length = 889

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 318 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLA 494
           VE+V          +  K+N++  K++++   T   ++  PAPP+   +V   EKPV  A
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--A 418

Query: 495 PI 500
           P+
Sbjct: 419 PV 420


>Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical
           protein R186.1 protein.
          Length = 276

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 485 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 399
           DG LS  D   + RG+WL L  +G  G +
Sbjct: 39  DGILSGVDKQENARGTWLGLNENGRIGMM 67


>Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical
           protein C06H5.2 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -3

Query: 380 LILFDSLKEVLSALGVL 330
           LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216


>Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical
           protein C06H5.1 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -3

Query: 380 LILFDSLKEVLSALGVL 330
           LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216


>AF026206-4|AAK39309.1|  535|Caenorhabditis elegans Hypothetical
           protein T28B4.1a protein.
          Length = 535

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 275 LVDNHTESVSSNVVHATCLSMVY 207
           + D H +++SSN  H  CL + Y
Sbjct: 246 ITDEHVDAISSNCAHLECLCVNY 268


>AF026206-3|AAK39308.1|  518|Caenorhabditis elegans Hypothetical
           protein T28B4.1b protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 275 LVDNHTESVSSNVVHATCLSMVY 207
           + D H +++SSN  H  CL + Y
Sbjct: 229 ITDEHVDAISSNCAHLECLCVNY 251


>AF026206-2|AAT92054.1|  552|Caenorhabditis elegans Hypothetical
           protein T28B4.1c protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 275 LVDNHTESVSSNVVHATCLSMVY 207
           + D H +++SSN  H  CL + Y
Sbjct: 263 ITDEHVDAISSNCAHLECLCVNY 285


>AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6b protein.
          Length = 533

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/72 (22%), Positives = 29/72 (40%)
 Frame = +3

Query: 294 IPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 473
           +P     R+  V+  +  ++  +R KE+E      +   + + + R P PP    I    
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266

Query: 474 EKPVLLAPIPYE 509
              + L  IP E
Sbjct: 267 PPNIPLPTIPQE 278


>AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6a protein.
          Length = 687

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/72 (22%), Positives = 29/72 (40%)
 Frame = +3

Query: 294 IPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 473
           +P     R+  V+  +  ++  +R KE+E      +   + + + R P PP    I    
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266

Query: 474 EKPVLLAPIPYE 509
              + L  IP E
Sbjct: 267 PPNIPLPTIPQE 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,453,439
Number of Sequences: 27780
Number of extensions: 259958
Number of successful extensions: 995
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)