Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1c08
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 318 5e-88
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 318 6e-88
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.63
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 28 1.1
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.9
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.9
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 27 1.9
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 1.9
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.9
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.4
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 4.4
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 4.4
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.8
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 7.7
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 7.7
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 7.7
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.7
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 7.7
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 318 bits (781), Expect = 5e-88
Identities = 143/206 (69%), Positives = 169/206 (82%)
Frame = +2
Query: 38 MGRRPARCYRYCKNEPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 217
M RRPARCYRYCKN+PYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 218 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 397
+SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 398 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 577
KP G VARV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE
Sbjct: 121 KPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDE 180
Query: 578 FEKLREEGRLANDGCIVQYRPEHGPL 655
+ + R G + DGC ++ + G L
Sbjct: 181 YIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 318 bits (780), Expect = 6e-88
Identities = 143/206 (69%), Positives = 169/206 (82%)
Frame = +2
Query: 38 MGRRPARCYRYCKNEPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 217
M RRPARCYRYCKN+PYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 218 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 397
+SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 398 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 577
KP G VARV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE
Sbjct: 121 KPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDE 180
Query: 578 FEKLREEGRLANDGCIVQYRPEHGPL 655
+ + R G + DGC ++ + G L
Sbjct: 181 YIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.63
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 62 YRYCKNEPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 238
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 239 G 241
G
Sbjct: 94 G 94
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Frame = +2
Query: 308 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 475
L P R+ C G GK +G AR+ IG+ + + K
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 476 QVIEALRRAKFKFPGRQKIYVSK 544
AL++A F PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 607 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 476
+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 119 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 238
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 607 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 476
+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 607 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 476
+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 236 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 607 EAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 476
+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 264 KARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 153 RERPLTTFHCACTWCPTNMNS 215
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 450 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 608
C L+T C + + SP+++RS Y +G++ S + + RAA+
Sbjct: 17 CLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 77 NEPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 205
NE S FC PDPK K A DD P + H+ S++
Sbjct: 78 NEFITDSFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 412 STLRLAKRTTHPSLEPISSS 353
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 5.8
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +2
Query: 140 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 283
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 7.7
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +3
Query: 417 HVFALDSPSC--PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSC 590
H+ +LDS S P AL + + VPS SSP VK ++ G S S SLRS
Sbjct: 422 HIPSLDSSSLLTPLALPNKKAFQPVKF-RVPSFSSPLVKPASSSSFGRSHSHLGTSLRSN 480
Query: 591 VKRAASPMTAV 623
+S +++
Sbjct: 481 ELNGSSASSSI 491
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 238 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 122
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 480 SSRLCAVPSSSSPDVKRSTYQRSGVS 557
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 281 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 385
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 7.7
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 105 VGVYLIPRSVSSIWV 149
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,134,698
Number of Sequences: 5004
Number of extensions: 69309
Number of successful extensions: 238
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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