Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1c05
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1066 + 30098780-30098866,30099139-30099225,30099318-300994...   315   3e-86
11_04_0205 + 14860857-14861534,14862585-14862975,14863069-148631...   298   3e-81
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390...   261   4e-70
01_06_1521 + 37956131-37957204,37958560-37958962,37959370-379594...   261   4e-70
05_04_0394 - 20906923-20907146,20907251-20907340,20908380-209087...   257   6e-69
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752...    42   7e-04
05_05_0162 + 22838907-22839070,22839180-22840063,22841164-22841228     32   0.45 
11_03_0028 - 9080650-9080667,9080701-9080794,9082099-9082185,908...    30   2.4  
05_03_0190 + 9485701-9485806,9487182-9487368,9489662-9489733,949...    29   4.2  
05_03_0205 - 10012256-10012588,10012676-10012826,10012909-100131...    28   9.6  
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494...    28   9.6  

>03_05_1066 +
           30098780-30098866,30099139-30099225,30099318-30099439,
           30099580-30099656,30100135-30100259,30100497-30100589,
           30100840-30100932,30101016-30101213,30101337-30101441,
           30101535-30101600,30101808-30101885,30102144-30102233,
           30102325-30102448,30102590-30102741
          Length = 498

 Score =  315 bits (773), Expect = 3e-86
 Identities = 147/233 (63%), Positives = 179/233 (76%)
 Frame = +1

Query: 82  MSAKLLNSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEG 261
           M  K LN+ L E DPE+ DII  EK RQ  GLE+I SENFTSV V+Q + S + NKYSEG
Sbjct: 29  MWPKQLNAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEG 88

Query: 262 MPNQRYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHG 441
            P  RYYGGNEYID  E L Q R+LEA+RL   +WGVNVQP SGSPANF VYT +++PH 
Sbjct: 89  YPGARYYGGNEYIDMAESLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKPHE 148

Query: 442 RIMGLDLPDGGHLTHGFFTATKKISATSIFFESMPYKVDPKSGLIDYDKLAETAKLFKPR 621
           RIM LDLP GGHL+HG+ T TKKISA SIFFE+MPY++D  +GLIDYD++ ++A LF+P+
Sbjct: 149 RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGLIDYDQMEKSAVLFRPK 208

Query: 622 LIIAGMSCYSRCLDYKRFREIADANGAYLMADMAHVSGLVAAGVIPSPFEYCD 780
           LI+AG S Y+R  DY R R++ D   A L+ADMAH+SGLVAAGV+PSPF+Y D
Sbjct: 209 LIVAGASAYARLYDYDRMRKVCDKQKAILLADMAHISGLVAAGVVPSPFDYAD 261


>11_04_0205 +
           14860857-14861534,14862585-14862975,14863069-14863170,
           14863438-14863682
          Length = 471

 Score =  298 bits (732), Expect = 3e-81
 Identities = 140/222 (63%), Positives = 170/222 (76%), Gaps = 1/222 (0%)
 Frame = +1

Query: 118 ADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPNQRYYGGNEY 297
           ADP + D++ +EK RQR+G+E+IASENFTS  V++ L S L NKYSEGMP  RYYGGN+ 
Sbjct: 15  ADPLVHDLLEREKRRQRSGIELIASENFTSFAVMEALGSALTNKYSEGMPGARYYGGNDV 74

Query: 298 IDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMGLDLPDGGH 477
           IDEIE L ++R+L A+RL +  WGVNVQPYSGSPA FA YT ++ PH RIMGLDLP GGH
Sbjct: 75  IDEIENLCRDRALAAFRLDAASWGVNVQPYSGSPATFAAYTALLNPHDRIMGLDLPSGGH 134

Query: 478 LTHGFFTA-TKKISATSIFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAGMSCYSR 654
           LTHG++TA  KKISATSI+FES+PYKV   +G IDY+KL E A  F+P+LII G S Y R
Sbjct: 135 LTHGYYTAGGKKISATSIYFESLPYKVSAATGYIDYEKLEEKALDFRPKLIICGGSAYPR 194

Query: 655 CLDYKRFREIADANGAYLMADMAHVSGLVAAGVIPSPFEYCD 780
             DY + R +AD  GA L+ DMAH+SGLVAA    +PFEYCD
Sbjct: 195 DWDYAKLRAVADKVGALLLCDMAHISGLVAAQEAANPFEYCD 236


>12_02_0028 -
           12437332-12437576,12438436-12438537,12438619-12439009,
           12439996-12440532
          Length = 424

 Score =  261 bits (640), Expect = 4e-70
 Identities = 123/189 (65%), Positives = 145/189 (76%), Gaps = 1/189 (0%)
 Frame = +1

Query: 217 LQCLSSCLHNKYSEGMPNQRYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGS 396
           ++ L S L NKYSEGMP  RYYGGNE IDE+E L + R+L A+ L  E WGVNVQPYSGS
Sbjct: 1   MEALGSPLTNKYSEGMPGSRYYGGNEVIDEVEELCRARALAAFHLDPEAWGVNVQPYSGS 60

Query: 397 PANFAVYTGIVEPHGRIMGLDLPDGGHLTHGFFTA-TKKISATSIFFESMPYKVDPKSGL 573
           PANFA YTG+++PH RIMGLDLP GGHLTHG++TA  KKISATSI+FES+PYKV  ++G 
Sbjct: 61  PANFAAYTGLLQPHERIMGLDLPSGGHLTHGYYTAGGKKISATSIYFESLPYKVSSETGY 120

Query: 574 IDYDKLAETAKLFKPRLIIAGMSCYSRCLDYKRFREIADANGAYLMADMAHVSGLVAAGV 753
           +DYDKL E A  F+P+LII G S Y R  DY RFR IAD  GA L+ DMAH+SGLVAA  
Sbjct: 121 VDYDKLEEKAMDFRPKLIICGGSAYPRDWDYARFRAIADKCGAMLLCDMAHISGLVAAQE 180

Query: 754 IPSPFEYCD 780
             +PF+Y D
Sbjct: 181 AANPFQYSD 189


>01_06_1521 +
           37956131-37957204,37958560-37958962,37959370-37959471,
           37959569-37959792
          Length = 600

 Score =  261 bits (640), Expect = 4e-70
 Identities = 129/228 (56%), Positives = 161/228 (70%), Gaps = 1/228 (0%)
 Frame = +1

Query: 100 NSNLWEADPELFDIIVKEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPNQRY 279
           N  L EADP++  ++  E+DRQ  G+E+IASENF    VL+ L S L NKYSEG P  RY
Sbjct: 141 NQALAEADPDVHALMELERDRQVRGIELIASENFVCRAVLEALGSHLTNKYSEGHPGARY 200

Query: 280 YGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGSPANFAVYTGIVEPHGRIMGLD 459
           YGGN++ID IE L   R+L A+ L    WGVNVQPYS + AN AVYTG++ P  RIMGL+
Sbjct: 201 YGGNQHIDGIERLCHERALAAFGLDPACWGVNVQPYSCTSANLAVYTGLLLPKDRIMGLE 260

Query: 460 LPDGGHLTHGFFTAT-KKISATSIFFESMPYKVDPKSGLIDYDKLAETAKLFKPRLIIAG 636
            P GGH++HG++T + KK+S  SIFFES+ YKV+P++G IDYDKL E A  F P+++I G
Sbjct: 261 PPSGGHVSHGYYTPSGKKVSGASIFFESLSYKVNPQTGYIDYDKLEERAMDFHPKILICG 320

Query: 637 MSCYSRCLDYKRFREIADANGAYLMADMAHVSGLVAAGVIPSPFEYCD 780
            S Y R  D+ R R IAD  GA LM DMAH+SGLVAA    SPF+YCD
Sbjct: 321 GSSYPREWDFARMRLIADKCGAVLMCDMAHISGLVAAKECRSPFDYCD 368


>05_04_0394 -
           20906923-20907146,20907251-20907340,20908380-20908785,
           20909264-20910247
          Length = 567

 Score =  257 bits (630), Expect = 6e-69
 Identities = 127/250 (50%), Positives = 170/250 (68%), Gaps = 7/250 (2%)
 Frame = +1

Query: 52  AAKRYISSTKMSAKLLNSNLW------EADPELFDIIVKEKDRQRAGLEMIASENFTSVP 213
           AAKR  ++  + A+      W      EADP++ +++ +E+ RQ  G+E+IASEN+    
Sbjct: 89  AAKRRAAAGGLEARRAAVRAWGCQPLTEADPDVHELMERERRRQAGGVELIASENYACRA 148

Query: 214 VLQCLSSCLHNKYSEGMPNQRYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSG 393
           VL  L S L NKYSEG+P  RYY GN++ID IE L  +R+L A+ L    WGVNVQPYS 
Sbjct: 149 VLDALGSHLTNKYSEGLPGARYYCGNQHIDAIERLCCDRALAAFGLDPSRWGVNVQPYSC 208

Query: 394 SPANFAVYTGIVEPHGRIMGLDLPDGGHLTHGFFTAT-KKISATSIFFESMPYKVDPKSG 570
           + ANFAVYTG++ P+ RIMGLD P GGH++HG++T + KK+S  SIFFE++ Y+V+P +G
Sbjct: 209 TSANFAVYTGLLLPNDRIMGLDSPSGGHVSHGYYTPSGKKVSGASIFFENLSYRVNPHTG 268

Query: 571 LIDYDKLAETAKLFKPRLIIAGMSCYSRCLDYKRFREIADANGAYLMADMAHVSGLVAAG 750
            IDYDK+ E A  F P+++I G S Y R  DY R R +AD  GA LM DMA +SGLVAA 
Sbjct: 269 YIDYDKVEEKAVDFHPKILICGASSYPRDWDYARMRLVADKCGAVLMCDMAQISGLVAAK 328

Query: 751 VIPSPFEYCD 780
              +PF+YCD
Sbjct: 329 ECRNPFDYCD 338


>12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,
            7526206-7526295,7526404-7526553,7527333-7528094,
            7528177-7528496,7528581-7528707,7528792-7528959,
            7529054-7530466,7530563-7530823,7530983-7531144,
            7531976-7532121,7532601-7532667,7533483-7533587
          Length = 1707

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +1

Query: 451  GLDLPDGGHLTHGFFTATKKISATSIFFE-SMPYKVDPKSG 570
            GL+LP GGH++  + T + K+S+ S+F E  M Y V+P++G
Sbjct: 1611 GLELPSGGHVSCRYCTPSGKLSSASVFIEMEMSYMVNPQTG 1651


>05_05_0162 + 22838907-22839070,22839180-22840063,22841164-22841228
          Length = 370

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 25/95 (26%), Positives = 45/95 (47%)
 Frame = +1

Query: 433 PHGRIMGLDLPDGGHLTHGFFTATKKISATSIFFESMPYKVDPKSGLIDYDKLAETAKLF 612
           P  R   +++   GH+ H F + T +  A   FF S+P+    +S +ID+  +A   +++
Sbjct: 116 PPDRYAVIEVGVNGHVMHRFLSETGRWEAMPSFFSSLPF---GRSTIIDHPPVAFGGRMW 172

Query: 613 KPRLIIAGMSCYSRCLDYKRFREIADANGAYLMAD 717
              L    +S +    D   FR +A   G+ L A+
Sbjct: 173 WIDLGWGAVS-FDPFADEPDFRIVALPTGSVLPAE 206


>11_03_0028 -
           9080650-9080667,9080701-9080794,9082099-9082185,
           9082276-9082333,9083535-9083598,9083837-9083898,
           9083976-9084027,9084410-9084530,9085369-9085463
          Length = 216

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 312 DTGTEQVSGSIQIKIGRMGRQCTAIFRLSGELC 410
           D+G+      I I IGR G  C+++ R  G+ C
Sbjct: 135 DSGSGPRLDGINISIGRRGESCSSVCRAKGQSC 167


>05_03_0190 +
           9485701-9485806,9487182-9487368,9489662-9489733,
           9490089-9490160,9490514-9490585,9490845-9490916,
           9491355-9491426,9491503-9491577,9492008-9492073,
           9492144-9492188,9492276-9492340,9492429-9492811,
           9492878-9493076,9493150-9493308,9493386-9493504,
           9493652-9493862,9493993-9494224,9494307-9494457,
           9494550-9494870
          Length = 892

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 354 IGRMGRQCTAIFRLSGELCRLYRHCRTPWQD 446
           +GR G++ ++ + +SGELC      +T W D
Sbjct: 43  LGRWGKKASSEWNISGELCSGLASDKTNWDD 73


>05_03_0205 -
           10012256-10012588,10012676-10012826,10012909-10013140,
           10013310-10013520,10013649-10013767,10013851-10014009,
           10014082-10014283,10014368-10014738,10014827-10014891,
           10014981-10015025,10015096-10015161,10015257-10015322,
           10015591-10015665,10015743-10015814,10016264-10016335,
           10016595-10016666,10017554-10017625,10017706-10017777,
           10023644-10023830,10024597-10024852
          Length = 965

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 354 IGRMGRQCTAIFRLSGELCRLYRHCRTPWQD 446
           +GR G++ +  + +SGELC  +   +T W +
Sbjct: 93  LGRWGKKASPEWNISGELCSGFAADKTDWDN 123


>01_05_0653 -
           23948911-23948937,23949031-23949141,23949361-23949441,
           23949865-23949984,23950088-23950252,23950344-23950493,
           23950565-23950674,23951401-23951518,23951597-23951827,
           23952345-23952524,23953639-23953908,23954930-23954979,
           23955213-23955288,23955396-23955483,23956010-23956101,
           23956200-23956529,23957484-23957593,23957810-23957907,
           23959538-23959566
          Length = 811

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 763 GSVLHLQQPVQIREPYQPSDKLHLRLRSHGTSYNRDILSNSS 638
           G +    Q VQ R P  P  + ++++R +    NRD++S+ S
Sbjct: 228 GDLSSTLQQVQARSPRLPIPEQNIKIRINPILTNRDVISDGS 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,464,207
Number of Sequences: 37544
Number of extensions: 461078
Number of successful extensions: 1044
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)