Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1c05
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    25   0.79 
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    25   0.79 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   4.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.4  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
 Frame = +1

Query: 124 PELFDIIVKEKDR-------QRAGLEMIASENFTSVPVLQCLSSCLHNKYS 255
           PE+FD++ ++K R        +A ++ +   N  + P + C   CL   +S
Sbjct: 32  PEVFDLVAEDKARCMSEHGTTQAQIDDVDKGNLVNEPSITCYMYCLLEAFS 82


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
 Frame = +1

Query: 124 PELFDIIVKEKDR-------QRAGLEMIASENFTSVPVLQCLSSCLHNKYS 255
           PE+FD++ ++K R        +A ++ +   N  + P + C   CL   +S
Sbjct: 32  PEVFDLVAEDKARCMSEHGTTQAQIDDVDKGNLVNEPSITCYMYCLLEAFS 82


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 288 PPIVPLIGHAFRIF 247
           PP +PLIG+A  +F
Sbjct: 47  PPALPLIGNALDLF 60


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 772 IRTGSVLHLQQPVQIREPYQPS 707
           I+TG+ ++L QP+ +  P  PS
Sbjct: 748 IQTGANVNLWQPLSVSIPPPPS 769


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,432
Number of Sequences: 438
Number of extensions: 5409
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)