Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1c04
(420 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 30 0.13
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 30 0.13
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 30 0.13
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 30 0.13
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 28 0.68
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 28 0.68
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 25 3.6
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 25 4.8
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 25 4.8
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 24 8.4
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 24 8.4
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 30.3 bits (65), Expect = 0.13
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 262 CVYKKPAASNQASFNMDLLIYDVDNYSFKNDSV 360
CV +P + A FN+DL+ Y V ND +
Sbjct: 61 CVAARPMTMDGAEFNLDLMGYSVSEDQINNDEI 93
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 30.3 bits (65), Expect = 0.13
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 262 CVYKKPAASNQASFNMDLLIYDVDNYSFKNDSV 360
CV +P + A FN+DL+ Y V ND +
Sbjct: 61 CVAARPMTMDGAEFNLDLMGYSVSEDQINNDEI 93
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 30.3 bits (65), Expect = 0.13
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 262 CVYKKPAASNQASFNMDLLIYDVDNYSFKNDSV 360
CV +P + A FN+DL+ Y V ND +
Sbjct: 33 CVAARPMTMDGAEFNLDLMGYSVSEDQINNDEI 65
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 30.3 bits (65), Expect = 0.13
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 262 CVYKKPAASNQASFNMDLLIYDVDNYSFKNDSV 360
CV +P + A FN+DL+ Y V ND +
Sbjct: 61 CVAARPMTMDGAEFNLDLMGYSVSEDQINNDEI 93
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 27.9 bits (59), Expect = 0.68
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 12 FLTRSNTKRFKC*TSLLTILKNGFYTNRLLLGLPIP 119
F+ S TK+ TSL + NG Y R LGL P
Sbjct: 359 FMFHSKTKKSSFNTSLGEFISNGIYEARKALGLLTP 394
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.9 bits (59), Expect = 0.68
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 2 VLKVFDAFEHKTIQMLNKFVNHFEKWVLYKPPSSRPANSERYLIC 136
V KVF + ++ + + F F K KPPSSR ++E +++C
Sbjct: 156 VTKVFRSRDYNNLLWV--FKQLFNKVEATKPPSSRNVSAEIFVVC 198
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 25.4 bits (53), Expect = 3.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 80 VLYKPPSSRPANSERYLICFNKLVRPYCNDYVNELEKQFKK 202
+ Y PPSS NS+ Y+ F V DY+ +++F +
Sbjct: 199 IRYSPPSSSKLNSKLYVKGFGTHVSLKRTDYLVVDDREFPR 239
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 25.0 bits (52), Expect = 4.8
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +2
Query: 89 KPPSSRPANSERYLICFNKLVRPYCND--YVNELEK 190
+PP+ R N +++ F+++ P+C D Y+NE+ K
Sbjct: 542 RPPAKR-VNYQKFGDNFSEIGNPFCCDWVYLNEMVK 576
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 25.0 bits (52), Expect = 4.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 287 EAAGFLYTHVIFLTNLSTCLSFLI 216
+A + V+F+T L TCL+F I
Sbjct: 113 QAVNIINIIVVFITTLLTCLAFAI 136
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 24.2 bits (50), Expect = 8.4
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +2
Query: 65 HFEKWVLYKPPSSRPANSERYLICFNKL 148
H KW Y RP + +++CF L
Sbjct: 394 HAPKWFKYVDREGRPLLAMAFVLCFGAL 421
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.2 bits (50), Expect = 8.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 310 PC*MMPDLKPLAFYIHTLYF*QIYQL 233
PC ++PD+ P A +H F ++ L
Sbjct: 1287 PCYLLPDIIPCALSLHNAEFQGLWPL 1312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,616,426
Number of Sequences: 5004
Number of extensions: 29131
Number of successful extensions: 76
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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