Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1c04
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0013 - 11251368-11252867                                         31   0.38 
08_02_1581 - 28004060-28004449,28004730-28004888,28004933-280050...    28   3.5  
04_04_0140 - 23073032-23073130,23073270-23073338,23073448-230735...    28   3.5  
11_01_0062 - 476027-476044,476791-477195,477287-477574,477653-47...    27   6.1  

>08_02_0013 - 11251368-11252867
          Length = 499

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 71  EKWVLYKPPSSRPANSERYLICFNKLVRPYCNDYVN 178
           E+W L+  PS+RP N ++YL+C+   +  +  D ++
Sbjct: 460 EEWRLH--PSARPCNLDQYLVCYVDRLHSWSGDCIS 493


>08_02_1581 -
           28004060-28004449,28004730-28004888,28004933-28005044,
           28005160-28005236,28005525-28006076
          Length = 429

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -1

Query: 186 SNSLT*SLQYGLTNLLKQIK*RSELAGREEGGLY-KTHFSKWLTNLFNI*IVLCSNASKT 10
           ++S +  LQ  +  L KQI+   E AG+E G  + +T ++ W      + I   S+A K 
Sbjct: 351 ADSRSAGLQLRIEELTKQIEQEDEHAGKERGSAHRRTRYACWPLRRLRV-ISASSSARKW 409

Query: 9   F 7
           F
Sbjct: 410 F 410


>04_04_0140 -
           23073032-23073130,23073270-23073338,23073448-23073539,
           23073637-23074550,23074646-23074779,23075003-23075058,
           23077556-23077646
          Length = 484

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 275 SQRLQIRHHSTWICSFTMSTIILSKM 352
           S+  Q+ H S WIC F  S  +LS++
Sbjct: 181 SRAPQLHHQSYWICIFGASQFLLSQL 206


>11_01_0062 -
           476027-476044,476791-477195,477287-477574,477653-477830,
           478005-478133,478531-478729,478832-478970,479130-479195,
           480459-480580,480672-480742,480819-480903,481335-481453,
           481577-481687,481945-482117,482375-482446,482768-482862,
           483361-483450,483550-483646
          Length = 818

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 53  KFVNHFEKWVLYKPPSSRPANSERYLIC-FNKLVRPYCNDYVNELE 187
           K +NH+EK+ ++   S   +  E  ++C F  L+R +      E+E
Sbjct: 197 KLMNHYEKYAIFMMLSKITSFEEGAILCNFLPLIREHLPSAAEEIE 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,086,335
Number of Sequences: 37544
Number of extensions: 144538
Number of successful extensions: 284
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)