Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1c04
         (420 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   1.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   2.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   3.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   3.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   5.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   7.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   7.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.5  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 211 HTIKKLKQVDKFVKNITCVYKKPAA 285
           H I +L++V +F+K  T    +PAA
Sbjct: 275 HRIPQLQEVSEFLKKNTGFTLRPAA 299


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 169 LCQ*IGKTV*KILSHTIKKLKQV 237
           LC+ +G +V + +SHT+ KL ++
Sbjct: 134 LCKELGISVVQKVSHTLYKLDEI 156


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 137 FNKLVRPYCNDYVNELEKQFKKYYR 211
           +N     Y N+Y N     +KK Y+
Sbjct: 94  YNNYNNNYNNNYNNNYNNNYKKLYK 118


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 137 FNKLVRPYCNDYVNELEKQFKKYYR 211
           +N     Y N+Y N     +KK Y+
Sbjct: 94  YNNYNNNYNNNYNNNYNNNYKKLYK 118


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 56  FVNHFEKWVLYKPPSSRP 109
           F    + W+ Y PPS  P
Sbjct: 323 FKKLIDNWMTYMPPSGIP 340


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 71  EKWVLYKPPSSRP 109
           + W+ Y PPS  P
Sbjct: 328 DNWMTYMPPSGIP 340


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 205 LSHTIKKLKQVDKFV 249
           +SHT+ KL +  KF+
Sbjct: 161 ISHTMSKLSRAVKFI 175


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +2

Query: 311 ICSFTMSTIILSKMIVC 361
           +C F ++TI+ + +I+C
Sbjct: 433 LCVFFLTTIVSTTVILC 449


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 271 KKPAASNQASFNMDLLIYDVDN 336
           K+ +A   A+FN+   IY+  N
Sbjct: 623 KRVSAGTPAAFNISTTIYENQN 644


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,301
Number of Sequences: 438
Number of extensions: 1771
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)