Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1c03
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   1.8  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   3.1  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   3.1  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    24   7.1  
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    24   9.4  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    24   9.4  

>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 146 FKEC---RSHLQCLLR*CFDALHNFCVAHTTALAPTRTFRA 33
           FK C   R+H    L   +  L++ CV ++T +A T+TF A
Sbjct: 130 FKNCVGFRNHKFFFLECFYLNLYSICVLYSTFVAITKTFTA 170


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 11  ALPSPGCVHGMFASVQALLCVQ--RKNYAAHRNITSVNIANDYDI 139
           ++ SP  +H + ++   LL     +KN+ + +    V ++N+YD+
Sbjct: 467 SMQSPSKLHSLTSNATDLLSSSSLKKNFFSQQEADEVELSNNYDL 511


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 238 QIFSKSLLQVLLCSRLIIFLSYNAIIINSLFLKNV 134
           +IF   ++ VL CSRL+  +S + ++  S ++  V
Sbjct: 406 EIFLNGVVSVLACSRLVFAVSRDGVLPFSNWISQV 440


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 156 LIIIALYDKKIINLLQSKTCKRLFEKI 236
           ++ I  YD   +  +  KTC++L EKI
Sbjct: 362 IVEICRYDIDSVRSVALKTCEKLMEKI 388


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 328 YNCYYTDNSDYRRCRLCRLDATRRRNK 248
           +N +Y D     R    R++ TRR+NK
Sbjct: 426 FNVFYPDLIGTGRAPTYRIERTRRKNK 452


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 274 LDATRRRNKIN*QIFSKSLLQVLLCSRLIIFLSYNAIIINSLFLKNVVVICNVY 113
           +DA +   +I  +++S  + ++ L   L IFL    II N L    +VV   ++
Sbjct: 673 IDALKTSRQIFHRMYSYVVYRIALSLHLEIFLGLWLIIRNQLLNLELVVFIAIF 726


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,359,734
Number of Sequences: 5004
Number of extensions: 22573
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)