Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1c03
(383 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0088 + 14494711-14494931,14496309-14496399,14496496-144965... 38 0.002
11_06_0007 - 19171122-19172036 35 0.025
03_05_1059 - 30020877-30021539,30022367-30022375 35 0.025
02_01_0238 - 1576211-1576759,1577315-1577664,1578684-1578816 35 0.025
03_02_0458 + 8643804-8643904,8643994-8644091,8644206-8644504,864... 33 0.059
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704... 33 0.077
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 33 0.10
11_06_0010 + 19235419-19236450 32 0.18
05_04_0224 - 19198722-19198835,19198947-19199436,19200478-192006... 31 0.24
04_03_0815 - 19949584-19950111,19950210-19950632 31 0.24
02_04_0043 + 19185969-19186036,19186205-19187342 31 0.24
04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345 31 0.31
09_03_0096 + 12328116-12329561,12329810-12329852,12332119-123322... 30 0.55
03_05_0617 + 26163161-26163595,26163678-26164202 30 0.72
01_05_0393 - 21732178-21732287,21732875-21733436 30 0.72
01_04_0052 + 15435709-15436004,15437760-15438255,15439171-15439320 29 0.95
07_03_1380 - 26163993-26164076,26164769-26165365 29 1.3
05_01_0299 - 2322204-2322734,2324089-2326164 29 1.3
01_05_0397 + 21753095-21753814 29 1.7
01_05_0392 + 21729501-21729895,21730198-21730312 28 2.2
10_08_0490 + 18279370-18279732,18280776-18280834,18281642-18282728 28 2.9
08_01_0957 - 9501132-9502106 28 2.9
07_03_0207 - 15183894-15184685,15184993-15185078,15186042-151861... 27 3.8
01_05_0394 + 21733751-21734584 27 5.1
07_03_1381 - 26166673-26166747,26166972-26167544 26 8.9
02_05_0350 - 28179063-28179584,28179674-28180041,28180179-281802... 26 8.9
02_04_0061 + 19361562-19363130 26 8.9
01_05_0398 - 21756818-21757534 26 8.9
>09_04_0088 +
14494711-14494931,14496309-14496399,14496496-14496571,
14496671-14496755,14497381-14497450,14499111-14499316,
14499434-14499508,14501043-14501133,14501400-14501441,
14501661-14501741,14502010-14502089,14502254-14502365
Length = 409
Score = 38.3 bits (85), Expect = 0.002
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 9 MPCRHLAVCTECSRRCKRCCVCNAKIMQRI 98
+PCRH +C CS +C+ C +C I ++
Sbjct: 364 LPCRHYVLCEACSDKCRSCPICRVSIENKL 393
>11_06_0007 - 19171122-19172036
Length = 304
Score = 34.7 bits (76), Expect = 0.025
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 9 MPCRHLAVCTECSRRCKRCCVCNA 80
+PCRHL +C C R + C VC A
Sbjct: 267 LPCRHLCLCRACEARAEACPVCLA 290
>03_05_1059 - 30020877-30021539,30022367-30022375
Length = 223
Score = 34.7 bits (76), Expect = 0.025
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 15 CRHLAVCTECSRRCKRCCVCNAKI 86
C H ++C ECS+RC C +C + I
Sbjct: 46 CGHASLCAECSQRCDVCPICRSPI 69
>02_01_0238 - 1576211-1576759,1577315-1577664,1578684-1578816
Length = 343
Score = 34.7 bits (76), Expect = 0.025
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 9 MPCRHLAVCTECSRRCKRCCVC 74
MPCRHL +C +C + C VC
Sbjct: 309 MPCRHLCLCADCEKNADVCPVC 330
>03_02_0458 +
8643804-8643904,8643994-8644091,8644206-8644504,
8645930-8646460
Length = 342
Score = 33.5 bits (73), Expect = 0.059
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 9 MPCRHLAVCTECSRRCKRCCVC-NAKIM 89
+PCRHL +C EC + C +C ++KI+
Sbjct: 309 LPCRHLCLCKECESKLSFCPLCQSSKIL 336
>10_03_0012 -
7037088-7037282,7037453-7037954,7038079-7038081,
7040633-7041213
Length = 426
Score = 33.1 bits (72), Expect = 0.077
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Frame = +3
Query: 9 MPCRHLAVCTECSR----RCKRCCVCNAKIMQRIE 101
+PCRH+ +C+EC++ + RC +C + + +E
Sbjct: 357 LPCRHMCMCSECAKVLRYQTNRCPICRQPVERLLE 391
>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
Length = 430
Score = 32.7 bits (71), Expect = 0.10
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Frame = +3
Query: 9 MPCRHLAVCTECSR----RCKRCCVCNAKIMQRIE 101
+PCRH+ +C+EC++ + RC +C + + +E
Sbjct: 352 LPCRHMCMCSECAKVLRYQTTRCPICRQPVERLLE 386
>11_06_0010 + 19235419-19236450
Length = 343
Score = 31.9 bits (69), Expect = 0.18
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 9 MPCRHLAVCTECSRRCKRCCVCNA 80
+PCRHL +C C + C VC A
Sbjct: 309 LPCRHLCLCKACEPKLDACPVCLA 332
>05_04_0224 -
19198722-19198835,19198947-19199436,19200478-19200641,
19202534-19202632,19204069-19204175,19204278-19204401,
19205113-19205242,19205314-19205433,19205861-19206002,
19207243-19207326,19207651-19207742,19207855-19207944,
19208057-19208136,19208312-19208451,19208587-19209067
Length = 818
Score = 31.5 bits (68), Expect = 0.24
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +3
Query: 12 PCRHLAVCTECSRRCK----RCCVCNAKIMQRIE 101
PCRHL +C+EC++ + +C +C + + +E
Sbjct: 777 PCRHLCMCSECAKTLRFQTDKCPICRQPVEKLME 810
>04_03_0815 - 19949584-19950111,19950210-19950632
Length = 316
Score = 31.5 bits (68), Expect = 0.24
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 9 MPCRHLAVCTECSRRCKRCCVCNA 80
+PCRHL +C C C VC A
Sbjct: 282 LPCRHLCLCGACEAAADACPVCAA 305
>02_04_0043 + 19185969-19186036,19186205-19187342
Length = 401
Score = 31.5 bits (68), Expect = 0.24
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 9 MPCRHLAVCTECSRRCKRCCVCNA 80
+PCRHL +C C C VC A
Sbjct: 367 LPCRHLCLCRGCEAAADACPVCAA 390
>04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345
Length = 347
Score = 31.1 bits (67), Expect = 0.31
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 9 MPCRHLAVCTECSRRCKRCCVCNA 80
+PCRHL +C C C VC A
Sbjct: 313 LPCRHLCLCRGCEAAVDACPVCAA 336
>09_03_0096 +
12328116-12329561,12329810-12329852,12332119-12332237,
12333326-12333853
Length = 711
Score = 30.3 bits (65), Expect = 0.55
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Frame = +3
Query: 9 MPCRHLAVCTECSRRCK-----RCCVCNAKIMQRI 98
+ C H +C C++R + RC CNAK+ +RI
Sbjct: 669 LQCAHQVLCVGCNKRHEEKGVARCPCCNAKVEERI 703
>03_05_0617 + 26163161-26163595,26163678-26164202
Length = 319
Score = 29.9 bits (64), Expect = 0.72
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 9 MPCRHLAVCTECSRRCKRCCVC 74
+PCRHL C C+ C C
Sbjct: 285 LPCRHLCACAPCAAAAAACPAC 306
>01_05_0393 - 21732178-21732287,21732875-21733436
Length = 223
Score = 29.9 bits (64), Expect = 0.72
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 7/28 (25%)
Frame = +3
Query: 12 PCRHLAVCTECSRRCK-------RCCVC 74
PC H AVC+ C+ R + RCC+C
Sbjct: 83 PCGHRAVCSACAARVRSAPNPDNRCCIC 110
>01_04_0052 + 15435709-15436004,15437760-15438255,15439171-15439320
Length = 313
Score = 29.5 bits (63), Expect = 0.95
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = +3
Query: 9 MPCRHLAVCTECSRRCK----RCCVCNAKI 86
+PCRH+ +C EC++ K +C +C +
Sbjct: 259 LPCRHMCLCRECAQVLKYQTNKCPICRQPV 288
>07_03_1380 - 26163993-26164076,26164769-26165365
Length = 226
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Frame = +3
Query: 12 PCRHLAVCTECSRRC------KRCCVCNA 80
PC H VC CS R +RCC+C A
Sbjct: 51 PCGHGDVCAGCSLRIRVFQNNRRCCICRA 79
>05_01_0299 - 2322204-2322734,2324089-2326164
Length = 868
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Frame = +3
Query: 6 FMPCRHLAVCTECS-----RRCKRCCVCNAKIMQRI 98
F+PC H VC +C+ + K C C I +R+
Sbjct: 826 FLPCAHQVVCAKCNDLHDKQGMKECPSCRTPIQRRV 861
>01_05_0397 + 21753095-21753814
Length = 239
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 7/28 (25%)
Frame = +3
Query: 12 PCRHLAVCTECSRRCK-------RCCVC 74
PC H VC+ C+ R + RCCVC
Sbjct: 53 PCGHRVVCSPCAARLRSGPNPDHRCCVC 80
>01_05_0392 + 21729501-21729895,21730198-21730312
Length = 169
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 9/32 (28%)
Frame = +3
Query: 12 PCRHLAVCTECSRRCK---------RCCVCNA 80
PC H VC+ C+ R + RCC+C A
Sbjct: 11 PCGHAGVCSVCAARIRSSRSWQPDLRCCICRA 42
>10_08_0490 + 18279370-18279732,18280776-18280834,18281642-18282728
Length = 502
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 9 MPCRHLAVCTECSRRCKRCCVCNAKIMQRIE 101
+PC H A C C+R C +C+ +I Q+I+
Sbjct: 122 IPCEH-AFCLACARSDSSCYLCDERI-QKIQ 150
>08_01_0957 - 9501132-9502106
Length = 324
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -2
Query: 220 LLQVLLCSRLIIFLSYNAIIINSLFLKNVVVICNV 116
++ +L S L++FL A+++ SLFL + V+C V
Sbjct: 170 VVPLLEYSLLLLFLDAMAVLLASLFLVYLTVVCAV 204
>07_03_0207 -
15183894-15184685,15184993-15185078,15186042-15186144,
15186890-15186971,15187112-15187203,15187295-15187383,
15187467-15187547,15188610-15188724,15188894-15188935
Length = 493
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +3
Query: 9 MPCRHLAVCTECSRRCKR----CCVCNAKIMQRI 98
+PC H+A C C + + C +C AKI Q I
Sbjct: 455 IPCGHMAGCMSCLKDIESKKWGCPICRAKINQII 488
>01_05_0394 + 21733751-21734584
Length = 277
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 7/28 (25%)
Frame = +3
Query: 12 PCRHLAVCTECSRRCK-------RCCVC 74
PC H VC+ C+ R + RCC C
Sbjct: 89 PCGHRVVCSACAARVRSAPYSDHRCCTC 116
>07_03_1381 - 26166673-26166747,26166972-26167544
Length = 215
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Frame = +3
Query: 12 PCRHLAVCTECS------RRCKRCCVCNA 80
PC H VC C+ + +RCC+C A
Sbjct: 46 PCGHGDVCAGCALHIRVFQNNRRCCICRA 74
>02_05_0350 -
28179063-28179584,28179674-28180041,28180179-28180270,
28180366-28180412
Length = 342
Score = 26.2 bits (55), Expect = 8.9
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +3
Query: 9 MPCRHLAVCTEC 44
+PCRHL++C +C
Sbjct: 303 LPCRHLSLCGDC 314
>02_04_0061 + 19361562-19363130
Length = 522
Score = 26.2 bits (55), Expect = 8.9
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +3
Query: 6 FMPCRHLAVCTECSRRCKRCCVC 74
F+P H +C RC R C C
Sbjct: 380 FLPFEHSPSAADCEVRCARNCSC 402
>01_05_0398 - 21756818-21757534
Length = 238
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Frame = +3
Query: 12 PCRHLAVCTECSRRC-------KRCCVCNAK 83
PC H AVC+ C R KR C+C +
Sbjct: 81 PCGHRAVCSMCVARVRAGPDADKRSCICRTR 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,359,589
Number of Sequences: 37544
Number of extensions: 130390
Number of successful extensions: 372
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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