Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1c02
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical ...    35   0.048
U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical pr...    34   0.084
AF016666-6|AAB66086.1|  292|Caenorhabditis elegans Hypothetical ...    34   0.084
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    33   0.19 
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    31   0.59 
AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical p...    30   1.8  
AF016666-4|AAB66082.1|  331|Caenorhabditis elegans Hypothetical ...    29   2.4  
AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical ...    29   4.2  
AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.     27   9.6  

>AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical
           protein Y67D8B.1 protein.
          Length = 374

 Score = 35.1 bits (77), Expect = 0.048
 Identities = 19/73 (26%), Positives = 29/73 (39%)
 Frame = +1

Query: 214 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCP 393
           M   KL   +CF   ++     +P D   ++PV  L  C H +C +C           CP
Sbjct: 1   MNLEKLSELLCFQCGKLYESITKPDDEAILVPV--LGACLHSICILC--ATGLESPNSCP 56

Query: 394 LCRVESLHFNVYS 432
           +C       N+ S
Sbjct: 57  ICENPEAFGNIIS 69


>U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical
           protein R02E12.4 protein.
          Length = 639

 Score = 34.3 bits (75), Expect = 0.084
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +1

Query: 214 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCP 393
           +EF  +QC+ICF V    N+  +P+  L         TCKH +C+ C           CP
Sbjct: 19  LEFEDVQCHICFQV----NH--EPVTFL---------TCKHSICAGCAGRWLSSCSV-CP 62

Query: 394 LC--RVESLHFN 423
           +C  RV  +H N
Sbjct: 63  MCRTRVREIHLN 74


>AF016666-6|AAB66086.1|  292|Caenorhabditis elegans Hypothetical
           protein B0281.8 protein.
          Length = 292

 Score = 34.3 bits (75), Expect = 0.084
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +1

Query: 328 CKHQLCSMCXXXXXXXXXXPCPLCR--VESLHFNVYSINRN--VVDVIKCSVTSVAQWNK 495
           C H LC  C           CP CR   E   +N+ S+++N  ++ +IK  VT   +  K
Sbjct: 28  CSHTLCEGCIKKLLKNGRVVCPFCREPTEVPVYNIKSLHKNFSLIQMIKI-VTKTTEVEK 86

Query: 496 INDNF 510
             DNF
Sbjct: 87  NWDNF 91


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
 Frame = +1

Query: 214 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCP 393
           + FV L C+ C S+ +   +F     R  +       +C H LCS C           CP
Sbjct: 22  LHFVSLVCSGCDSLGDRDRFFDNDKKRPCV------SSCNHSLCSQC-----FDKFTECP 70

Query: 394 LCRVESLHFNVYSINRNVVDVIKCSVTSVAQ--WNKINDNFDAAS 522
           +C+   +    Y   R +V+  K + T + +  WN   +  +  S
Sbjct: 71  ICKEPLVRSENYQA-RKIVEHFKENPTMIIEKWWNSTANGSETCS 114


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +1

Query: 478 VAQWNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQ 657
           + Q ++++ NF    L  + + + L+DD ++   A  +   + + +QA+ +K+ +   E+
Sbjct: 498 IQQLDQVHQNFMRYKLLMLRYSEYLIDDCDEKEKAQEAIQKLENVTQAVNQKMGLPTTEE 557

Query: 658 -TQLNIKRQLDLN 693
            T+L  + Q   N
Sbjct: 558 LTKLYYRFQCQFN 570


>AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical
           protein F40G9.14 protein.
          Length = 261

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/81 (24%), Positives = 30/81 (37%)
 Frame = +1

Query: 217 EFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCPL 396
           E+V  +C ICF   E+      P           +  C H  C  C           CP 
Sbjct: 132 EYVDDECKICFEKYEVTGN-RSP----------RVFNCGHTYCESCIQVCKHQFQIKCPF 180

Query: 397 CRVESLHFNVYSINRNVVDVI 459
           C   S   N +S N+ +++V+
Sbjct: 181 CTTTSYQIN-FSTNKLILEVL 200


>Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical
           protein C55A6.1 protein.
          Length = 228

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +1

Query: 283 PIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCPLCRVESLHFNVYSINRNVVDV 456
           PI +  +I    +  C H+ C +C           CP+CR   +  N+++    V+D+
Sbjct: 13  PICQCKMIVPTTIPACGHKFCFICLKGVYMNDMGGCPMCR-GPIDSNIFAQPSQVLDL 69


>AF016666-4|AAB66082.1|  331|Caenorhabditis elegans Hypothetical
           protein B0281.3 protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +1

Query: 328 CKHQLCSMCXXXXXXXXXXPCPLCR--VESLHFNVYSINRN--VVDVIKCSVTSVAQ 486
           C H LC  C           CP CR   E    N+ S+++N  ++ VIK ++   A+
Sbjct: 57  CCHTLCEGCIKKLLNYSRIVCPFCREPTEVPGNNIKSLHKNFSLIQVIKTTLVEEAE 113


>AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical
           protein F42G2.5 protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 328 CKHQLCSMCXXXXXXXXXXPCPLCRVESLHFNVYSINRN 444
           C H +C  C           CP CR E+   +V S+ +N
Sbjct: 155 CGHSICQSCASKLAKNCVILCPFCRNETNVSSVASLPKN 193


>AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical
           protein F43C11.8 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
 Frame = +1

Query: 214 MEFVKLQ-CNICFSVAEIKNYFMQPIDRLTIIPVLELDT----CKHQLCSMCXXXXXXXX 378
           M F++ + CN  FS A  +N   + + +L ++P L+L      C H +C  C        
Sbjct: 1   MSFIECEICNEDFSSATDEN-IPRILSKL-LLPFLKLKNKNSGCGHTICHGCAEKLLQNS 58

Query: 379 XXPCPLCRVESLHFNVYSINRN 444
              CP CR  +    V  + +N
Sbjct: 59  MILCPFCREATNVSTVKDLQKN 80


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +1

Query: 517 ASLASVLFEK-SLLDDAEDSNNAA--NSDDTMLSESQAILKKLQIDIAEQ 657
           + L + LFE  SLL  AE  N  A  N DDTML+E  +  ++    +AE+
Sbjct: 71  SGLGNQLFEVVSLLGMAEVLNRTAIFNKDDTMLNEKLSFFRETVPRVAEK 120


>Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical
           protein T15D6.3 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +1

Query: 40  RSAVFGI---PNN*FRKQLFAKRLYIKSKSERYF 132
           RS VFGI   PN    + L A +LYI+S+ E +F
Sbjct: 338 RSCVFGIGDVPNLMKSRALVAHKLYIESEPEAFF 371


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 325 TCKHQLCSMCXXXXXXXXXXPCPLCR 402
           TC H LC  C           CP CR
Sbjct: 26  TCGHALCHKCITAMVNNSTVECPFCR 51


>AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +1

Query: 40  RSAVFGI---PNN*FRKQLFAKRLYIKSKSERYF 132
           RS VFGI   PN    + L A +LYI+S+ E +F
Sbjct: 230 RSCVFGIGDVPNLMKSRALVAHKLYIESEPEAFF 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,874,968
Number of Sequences: 27780
Number of extensions: 251936
Number of successful extensions: 800
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)