Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1c01
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 31 0.13
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 31 0.13
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 26 5.0
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 5.0
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.6
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 26 6.6
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 25 8.7
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 25 8.7
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 25 8.7
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 8.7
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 31.5 bits (68), Expect = 0.13
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +3
Query: 9 QIKSMTDERGNFYYNTPPPPLRY--PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSR 182
QI +RGN + +PPPPL Y P AT NA NNA TT N +
Sbjct: 48 QIPLYWQQRGNEFQASPPPPLGYVTPEYGATGTPVNA---NNASRVDYATTAANVPEEYA 104
Query: 183 SNSTNSVAIAPYNKSKEPTLD 245
++ ++ +A +N + P +D
Sbjct: 105 NDYSSELAYI-HNVNDMPHVD 124
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 31.5 bits (68), Expect = 0.13
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Frame = +3
Query: 183 SNSTNSVAIAPYNKSKEPTLDAGESIWY------NKCVDFVQKIIRYYRCNDMSELSPLM 344
+N + I K+ + AGE++ Y N+C+ F+ + R ++C D +E L+
Sbjct: 476 NNDDPQIQIEILRSLKDTFIKAGENVKYLLPVVVNRCI-FLARNFRIFKCMDWAEKVRLL 534
Query: 345 IHFINT 362
F+NT
Sbjct: 535 WEFVNT 540
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 564 FYNGGADMLGKDALAEAAKQLSLA 635
FY ++ GK LAEAAKQ+ ++
Sbjct: 49 FYIPSFNLFGKGCLAEAAKQIKMS 72
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 63 PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVA 206
PP+ P+ + TN+ ++A G+ PP K++ RS+S N A
Sbjct: 536 PPIVKPNLMSEPTPTNSDEKSHALGFPPPP--GQKIEFQRSSSKNGTA 581
>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 25.8 bits (54), Expect = 6.6
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Frame = +3
Query: 330 LSPLMIHFINTIR-DMCIDTNPINV-----NVVKRFESEETMIRHLIRLQKELGQGNAAE 491
L+ ++ +F+ + D ++TNP V NV K FE ET K L GN
Sbjct: 3 LTSVLWNFVAKLAVDHGLNTNPDQVFQTVENVGKSFEKYETSFL------KSLFNGNLGL 56
Query: 492 SLPSDSNIFQASFVL 536
SLPS NI VL
Sbjct: 57 SLPSAINILTLIIVL 71
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 434 HDTPPDSVAKRVGTRQRGRVPAERFEYI 517
+D+ PD++ +RV +QR P + F+ I
Sbjct: 160 NDSVPDTIDERVLNKQRNNKPLDNFKCI 187
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 25.4 bits (53), Expect = 8.7
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
Frame = +3
Query: 123 NNAPGYVPPTTRDNKMDTSRSNST--NSVAIAPYNKSKEPTLDAGESIWYNKCVDFVQKI 296
+N P PP N D S S +T N + +S + D SI N F K
Sbjct: 524 HNGPSTQPPEALPNGTDPSSSKTTENNGNQQSERTESADGKKDNSGSISSNSSKTFTGKR 583
Query: 297 IRYYRCNDMSELSPLMIHFINTIRDMCIDTNPINVNVVKRFE 422
+R + + +SP + I I +P N ++V+ E
Sbjct: 584 VRLGNVIESNVVSPDGTNRI-VIEPFERSVDPNNADIVEMVE 624
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 3 RVQIKSMTDERGNFYY-NTPPPPLRYPS 83
R+Q+ T G++ + N PPP LR P+
Sbjct: 63 RLQLYKKTISEGDYNFDNVPPPELRTPT 90
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 149 YDARQQNGHEPQQQHKLGSDRTVQQEQR 232
Y QQN E Q HK D+ QE++
Sbjct: 600 YLGNQQNAVEGDQDHKKKGDKETTQEEK 627
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 33 RGNFYYNTPPPPLRYPSNPATAIFTNAQTYNN 128
RG Y N PP Y SN ++YNN
Sbjct: 953 RGGGYSNGPPAGNHYSSNRGKGYGYQRESYNN 984
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,526
Number of Sequences: 5004
Number of extensions: 62143
Number of successful extensions: 243
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -