Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1b19
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    51   2e-07
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    29   0.49 
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc...    28   1.1  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   7.9  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    25   7.9  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   7.9  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 6/159 (3%)
 Frame = +3

Query: 222 AVPDDVNGEAKDSAAEENYDP----HEHRQLPKPTN--NIETLIHLLKCSLGTGILAMPQ 383
           A+P DVN     S      +P    H   +L  P N  N + ++ LLK  +GTG+L +P+
Sbjct: 239 AMPRDVNPSLIHSTVPSEQEPLISRHGRYKLQTPGNASNGKAVLLLLKSFVGTGVLFLPK 298

Query: 384 AFARAGLVTGIVFTVLIGVLVTHCLHVLVRSQYAACKHLRVPLLSYPASMAAALEVGPAP 563
           AF   GLV      +++GVL   C  +L++++           +  P S          P
Sbjct: 299 AFKLGGLVFSSATLLIVGVLSHICFLLLIQTR-----------MKVPGSFGDIGGTLYGP 347

Query: 564 FRRLARPASITVXIFLVVYQLGICCVYIVFIADNIKKIV 680
             R A  ASI      VV Q+G    YI F+A  ++  V
Sbjct: 348 HMRFAILASI------VVSQIGFSSAYISFVASTLQACV 380


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +3

Query: 153 QYLRSI-G*PIRMDENKAETMYLRAVPDDVNGEAKDSAAEENYDPHEHRQLPKPTNNIET 329
           +YLR +    ++ D  KAETM L     D + E   S      DP +H  +   T  IE+
Sbjct: 219 EYLRRLTAVRLQFDIMKAETMLLCRCDTD-HAEFITSVV----DPRDHAYVLGATTKIES 273

Query: 330 LIHLLKCSLGTGI 368
           LI  LK +  TG+
Sbjct: 274 LIKALKDAESTGV 286


>SPCC188.06c |srp54||signal recognition particle subunit
           Srp54|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 522

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 568 LKGAGPTSSAAAMEAGYDSRGTRRCLQAAYCDRTSTWRQ 452
           L+G+G T++ + +   Y  RG + CL AA   R   + Q
Sbjct: 109 LQGSGKTTTCSKLALHYQRRGLKSCLVAADTFRAGAFDQ 147


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 252 KDSAAEENYDPHEHRQLPKPTNNIETLIH 338
           +DS+    +DP  H  LP P+NN + + H
Sbjct: 61  QDSSISFTHDPL-HIPLPNPSNNNDNIFH 88


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 106 SCGP*IYNKTR-HAVSINTYVPLDSRSEWTRTKRRRCTFVLSLTMST-VKQRTLQPKR 273
           S GP I   +R H +S    + LDS S+ T    RR     S+ MST  ++R + P+R
Sbjct: 66  SPGPNIPQSSRSHLLSQRNDLFLDSSSQRTPRSTRRGDIHSSVQMSTPSRRREVDPQR 123


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 20/90 (22%), Positives = 37/90 (41%)
 Frame = +3

Query: 351 SLGTGILAMPQAFARAGLVTGIVFTVLIGVLVTHCLHVLVRSQYAACKHLRVPLLSYPAS 530
           SL + ++A    F+   +  G  F  +     T CL  +VR+ + + K   +  L YP  
Sbjct: 324 SLDSWMIASCNIFSPHLIHAGTKFLKIDSTPSTPCLISVVRTGFRSNKGQLIRNLLYPNL 383

Query: 531 MAAALEVGPAPFRRLARPASITVXIFLVVY 620
             + L +    F +     S    +F+ +Y
Sbjct: 384 RPSQLYLDSMSFLKTMAILSFVSIVFIAIY 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,582
Number of Sequences: 5004
Number of extensions: 45402
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)