Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1b19
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.53 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.53 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.53 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.53 
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    24   1.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 333 IHLLKCSLGTGILAMPQAFARAGLVTGIVFTVLIGVLVTHCLHVLVRSQ 479
           + L +C+ G G L+   + +   L + ++FT+L  + +   L  LVR++
Sbjct: 4   VALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 333 IHLLKCSLGTGILAMPQAFARAGLVTGIVFTVLIGVLVTHCLHVLVRSQ 479
           + L +C+ G G L+   + +   L + ++FT+L  + +   L  LVR++
Sbjct: 4   VALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 333 IHLLKCSLGTGILAMPQAFARAGLVTGIVFTVLIGVLVTHCLHVLVRSQ 479
           + L +C+ G G L+   + +   L + ++FT+L  + +   L  LVR++
Sbjct: 4   VALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 333 IHLLKCSLGTGILAMPQAFARAGLVTGIVFTVLIGVLVTHCLHVLVRSQ 479
           + L +C+ G G L+   + +   L + ++FT+L  + +   L  LVR++
Sbjct: 4   VALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 128 TRPDTRFPSIPTFHWIADQNGREQSGDDVPSCCP 229
           T PD +  SI    ++AD+NG +  G  +P+  P
Sbjct: 78  TAPDGQQVSIT---YVADENGFQVQGSHIPTAPP 108


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 293 MFVRVVVLFGCRVLCFTVDIVRDSTKVHRLRFVL 192
           +FV + VL   +V+CF    +  ++ ++RL+  L
Sbjct: 11  LFVIINVLLHGQVICFVCKDITSTSALYRLKLYL 44


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 555 PAPFRRLARPASITVXIFLVVYQLGICCVYIVF 653
           PAP +      +I   + L++  +G CCV  +F
Sbjct: 50  PAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIF 82


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 555 PAPFRRLARPASITVXIFLVVYQLGICCVYIVF 653
           PAP +      +I   + L++  +G CCV  +F
Sbjct: 50  PAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIF 82


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 128 TRPDTRFPSIPTFH 169
           TRPDT+F  +P  +
Sbjct: 150 TRPDTKFIQLPPLY 163


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 128 TRPDTRFPSIPTFH 169
           TRPDT+F  +P  +
Sbjct: 150 TRPDTKFIQLPPLY 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,930
Number of Sequences: 438
Number of extensions: 3560
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)