Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1b15
         (722 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4RP74 Cluster: Chromosome 1 SCAF15008, whole genome sh...    35   1.8  
UniRef50_Q387K6 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_Q21376 Cluster: Putative extracellular sulfatase Sulf-1...    34   4.1  
UniRef50_Q01X73 Cluster: Amino acid permease-associated region; ...    33   7.1  
UniRef50_A3I3A0 Cluster: Sensor protein; n=1; Algoriphagus sp. P...    33   7.1  
UniRef50_A1TXN0 Cluster: Phage integrase family protein; n=1; Ma...    33   9.4  

>UniRef50_Q4RP74 Cluster: Chromosome 1 SCAF15008, whole genome
           shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 1
           SCAF15008, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 968

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 507 NCYLTNGDNRLYRCISQKCQVHHLR 581
           NC+LT+G  ++ RC+ +KC+  H+R
Sbjct: 563 NCHLTSGSEKILRCVVRKCKNTHIR 587


>UniRef50_Q387K6 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 821

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 25/88 (28%), Positives = 42/88 (47%)
 Frame = +1

Query: 301 GELKSYWTQLEDPLDERILNTLKAISILSGDTRGDLSGKYKHLVRISGDDMPQXXXXXXX 480
           GEL + WT+L D L +R+  + + +  L G TR +L      +V+ S D+          
Sbjct: 525 GELNTVWTELRD-LQKRLGTSKEEMIALIGHTRKELLNSTLDIVKDSSDEF----RGALT 579

Query: 481 XXXXGPKTLIATLRMAITAYTAALARNA 564
                 + L+  +  A+TA  AA+ +NA
Sbjct: 580 DIKTDVQLLMPRVEKALTAARAAVEKNA 607


>UniRef50_Q21376 Cluster: Putative extracellular sulfatase Sulf-1
           homolog precursor; n=2; Caenorhabditis|Rep: Putative
           extracellular sulfatase Sulf-1 homolog precursor -
           Caenorhabditis elegans
          Length = 709

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +3

Query: 510 CYLTNGDNRLYRCISQKCQVHHLRYCYRISRFDGHHSDDTVPAGIFPIIIRASLSCLE 683
           C+  N +N  Y C+  K + H+  YC  ++ F   +  +T P  +   +    +  LE
Sbjct: 603 CFCQNCNNNTYWCLRTKNETHNFLYCEFVTEFISFYDFNTDPDQLINAVYSLDIGVLE 660


>UniRef50_Q01X73 Cluster: Amino acid permease-associated region;
           n=1; Solibacter usitatus Ellin6076|Rep: Amino acid
           permease-associated region - Solibacter usitatus (strain
           Ellin6076)
          Length = 461

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 297 SFCHFIRGGVTDLWRIEGWNR-SLSSHVIANPSQNLP 190
           +F  FI   V  LW  +GWN  S+ S  I +P +NLP
Sbjct: 211 TFSGFIAALVAALWAYDGWNNVSMVSSEIKDPQKNLP 247


>UniRef50_A3I3A0 Cluster: Sensor protein; n=1; Algoriphagus sp.
           PR1|Rep: Sensor protein - Algoriphagus sp. PR1
          Length = 447

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 319 WTQLEDPLDERILNTLKAISILSGDTRGDLSGKYKHLVRISGDDM 453
           W  L   L   I+N++  IS L+G  +GD+  K   +  +S  DM
Sbjct: 221 WQNLVKILTHEIMNSIAPISSLAGTIKGDIESKMDEISPVSPSDM 265


>UniRef50_A1TXN0 Cluster: Phage integrase family protein; n=1;
           Marinobacter aquaeolei VT8|Rep: Phage integrase family
           protein - Marinobacter aquaeolei (strain ATCC 700491 /
           DSM 11845 / VT8)(Marinobacter hydrocarbonoclasticus
           (strain DSM 11845))
          Length = 396

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +1

Query: 229 QRPVPAFNPPEVGHSPSDEMAKRL--GELKSYWTQLED-PLDERILNTLKAISILSGDTR 399
           + P     P ++G S     ++ L   E+K +W  LED  LD  +   LKAI +L+G  R
Sbjct: 175 ENPCYGLQPSKLGASKGSPRSRVLTPSEMKRFWEALEDSSLDTSVRAALKAI-LLTGLRR 233

Query: 400 GDL 408
           G++
Sbjct: 234 GEI 236


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 684,497,007
Number of Sequences: 1657284
Number of extensions: 13473069
Number of successful extensions: 33389
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33379
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)