Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1b15
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    27   3.6  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    26   6.3  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    25   8.3  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   8.3  

>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +1

Query: 247 FNPPEVGHSPSDEMAKRLGELKSYWTQLEDPLDERILNTL--KAISILSGDTRGDLSGKY 420
           F PP  GHSP  E  K+ G L S     E  + + I  +L  + I  +S   +  + G +
Sbjct: 413 FVPPSQGHSPLLEKIKKQGSLPSTTPVNEGGISDIIPKSLYDQVIRFISTFYKAPVFGIF 472

Query: 421 KHLVR 435
           +  +R
Sbjct: 473 RKTLR 477


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 255 RIEGWNRSLSSHVIANPSQNLPCQSNF 175
           R + W+RSLS+++  + S + P  S+F
Sbjct: 113 RKKSWSRSLSNNISLSQSSSSPATSSF 139


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 270 VTDLWRIEGWNRSLSSHVIANPSQNLPCQS 181
           + D+WR EGW R   S +  N  + +P  S
Sbjct: 329 IRDIWRSEGW-RKYYSGMATNFIRTIPASS 357


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 292 KRLGELKSYWTQLEDPLDERILNTLKAISILSGDTRG 402
           K L E K  + ++E  LD+R+  T   +S L GD +G
Sbjct: 719 KNLSEAKPIFDEIE-LLDKRLSETKTELSDLQGDLQG 754


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,581
Number of Sequences: 5004
Number of extensions: 56211
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)