Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1b15
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0205 - 27495030-27495128,27495397-27496265,27496352-274965...    28   6.5  
07_01_0745 + 5691926-5692095,5692654-5692735,5693256-5693334,569...    28   8.6  

>01_06_0205 -
           27495030-27495128,27495397-27496265,27496352-27496511,
           27497136-27497208,27497311-27497430,27498454-27498618,
           27498695-27498785,27499381-27499465,27499555-27499740,
           27499843-27499899,27499998-27500282
          Length = 729

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 543 RCISQKCQVHHLRYCYRISRFDGHHSDDT 629
           + +   C  H  R CYRI   D  ++DDT
Sbjct: 689 KSLGSSCATHFHRLCYRIQDDDRGNADDT 717


>07_01_0745 +
           5691926-5692095,5692654-5692735,5693256-5693334,
           5693452-5693543,5693895-5693982,5694099-5694208,
           5694399-5694515,5694883-5695034,5699134-5699229,
           5699308-5699383,5699481-5699534
          Length = 371

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +1

Query: 103 PLKRNYQLIYPIMASHSHDTIDLSEIGLTREVLTGVGDYMTGQRPVPAFNPPEVGH-SPS 279
           PL   Y   Y ++  + H T  L  +G+  E +        GQ P+   +   V     S
Sbjct: 137 PLHLEYS--YELLLQYLHKTQALVVLGIINERIDF--QVSPGQSPLIIDDSDAVVLIGTS 192

Query: 280 DEMAKRLGELKSYWTQLEDPLDERI 354
            ++ K++ + + +W  LED L+ER+
Sbjct: 193 KDLTKQINQKEVHWGILEDSLEERM 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,561,036
Number of Sequences: 37544
Number of extensions: 382072
Number of successful extensions: 1014
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)