Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1b15
         (722 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ021880-1|AAY26398.1|  724|Homo sapiens GRB2-associated binding...    33   0.78 
BC064848-1|AAH64848.1|  724|Homo sapiens GRB2-associated binding...    33   0.78 
AK022142-1|BAB13970.1|  275|Homo sapiens protein ( Homo sapiens ...    33   0.78 
AF233523-1|AAF65317.1| 3674|Homo sapiens beta V spectrin protein.      30   9.6  

>DQ021880-1|AAY26398.1|  724|Homo sapiens GRB2-associated binding
           protein 1 protein.
          Length = 724

 Score = 33.5 bits (73), Expect = 0.78
 Identities = 24/71 (33%), Positives = 32/71 (45%)
 Frame = +1

Query: 73  PALVCDCEYPPLKRNYQLIYPIMASHSHDTIDLSEIGLTREVLTGVGDYMTGQRPVPAFN 252
           P  V DCE PP+ RN   + P     S   + L   GL R     +GD+ T ++  PA  
Sbjct: 508 PVPVADCEPPPVDRN---LKPDRKGQSPKILRLKPHGLERTDSQTIGDFATRRKVKPA-- 562

Query: 253 PPEVGHSPSDE 285
           P E+   P  E
Sbjct: 563 PLEIKPLPEWE 573


>BC064848-1|AAH64848.1|  724|Homo sapiens GRB2-associated binding
           protein 1 protein.
          Length = 724

 Score = 33.5 bits (73), Expect = 0.78
 Identities = 24/71 (33%), Positives = 32/71 (45%)
 Frame = +1

Query: 73  PALVCDCEYPPLKRNYQLIYPIMASHSHDTIDLSEIGLTREVLTGVGDYMTGQRPVPAFN 252
           P  V DCE PP+ RN   + P     S   + L   GL R     +GD+ T ++  PA  
Sbjct: 508 PVPVADCEPPPVDRN---LKPDRKGQSPKILRLKPHGLERTDSQTIGDFATRRKVKPA-- 562

Query: 253 PPEVGHSPSDE 285
           P E+   P  E
Sbjct: 563 PLEIKPLPEWE 573


>AK022142-1|BAB13970.1|  275|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12080 fis, clone HEMBB1002477, highly similar to
           Human Grb2-associated binder-1 mRNA. ).
          Length = 275

 Score = 33.5 bits (73), Expect = 0.78
 Identities = 24/71 (33%), Positives = 32/71 (45%)
 Frame = +1

Query: 73  PALVCDCEYPPLKRNYQLIYPIMASHSHDTIDLSEIGLTREVLTGVGDYMTGQRPVPAFN 252
           P  V DCE PP+ RN   + P     S   + L   GL R     +GD+ T ++  PA  
Sbjct: 59  PVPVADCEPPPVDRN---LKPDRKGQSPKILRLKPHGLERTDSQTIGDFATRRKVKPA-- 113

Query: 253 PPEVGHSPSDE 285
           P E+   P  E
Sbjct: 114 PLEIKPLPEWE 124


>AF233523-1|AAF65317.1| 3674|Homo sapiens beta V spectrin protein.
          Length = 3674

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 265  GHSPSDEMAKRLGELKSYWTQLEDPLDERILNTLKAISIL 384
            GH  S+ + +RL EL + W +L+D   +++    KA   L
Sbjct: 2751 GHPASEAIQERLEELGALWGELQDNSQKKVAKLQKACEAL 2790


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,862,569
Number of Sequences: 237096
Number of extensions: 2016476
Number of successful extensions: 4031
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4026
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)