Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1b14
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    23   3.1  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    22   5.3  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   5.3  

>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 560 SFLPTFLRGSCPA*FCSASGIPAVSKI 480
           S  P  LRGSCP   C+   +  + K+
Sbjct: 67  SLAPLVLRGSCPQ--CTPQEMKQIQKV 91


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 555 LADFLKGKLSCIIL*CFWNPSCFE 484
           +AD L G ++CI      +P+C E
Sbjct: 90  VADILSGAIACIGFSWIASPACTE 113


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 244 HYRCCCAYSSTG 209
           HY C C Y  TG
Sbjct: 82  HYTCHCPYGYTG 93


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,277
Number of Sequences: 336
Number of extensions: 2444
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)