Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1b12
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...   229   3e-61
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    27   2.6  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    27   3.4  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   7.8  

>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score =  229 bits (560), Expect = 3e-61
 Identities = 100/190 (52%), Positives = 135/190 (71%)
 Frame = +2

Query: 119 MKIAVEGCAHGELDKIYDCIETLQEREGFKIDLLICCGDFQSVRNAADLRAMAVPEKYQR 298
           M++ V+GC HG LD +Y     L E+   K+DLLI  GDFQ++RN +D   +++P K++R
Sbjct: 16  MRVGVQGCCHGILDNLY----ILAEKR--KVDLLIIGGDFQALRNVSDYHGISMPPKFKR 69

Query: 299 MCTFYKYYSGEKKAPVLTLFIGGNHEASNYLQELPYGGWVAPNIYYMGRAGVVKFGELRI 478
           +  F+ YY+G  KAP+LT+F+GGNHEASNYL ELPYGGWVAPNIYYMGR+ V+  G LRI
Sbjct: 70  LGDFFNYYNGRNKAPILTIFVGGNHEASNYLDELPYGGWVAPNIYYMGRSSVINVGGLRI 129

Query: 479 GGLSGIFKGHDYLQGLWECLPYNQNSMRSVYHIRSLDVFRLSQLKEKLHVMLTHDWPRGI 658
            G+SGI+   DY +G +E LPYN   ++S+YH R  DV  L  L++ + + L+HDWPRGI
Sbjct: 130 AGISGIYSAMDYKKGRYEGLPYNYKMLKSIYHTREFDVLSLKSLQKPIDIFLSHDWPRGI 189

Query: 659 TDYGDKDHLL 688
             +GD   LL
Sbjct: 190 EQHGDVAKLL 199


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 116 IMKIAVEGCAHGELDKIYDCIETLQEREGFKIDLL--ICCGDFQSVRNAAD 262
           IMK  V    H   +++ +CIE+LQE +  + +L+  I C  F+  +   D
Sbjct: 390 IMKWLVSDVEHIPDERLRECIESLQEIDSKEENLMTEIFCTAFKETKKVND 440


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 113 VIMKIAVEGCAHGELDKIYDCIETLQEREGFKIDL 217
           VIM ++ +G   G L      +ETL ++EG+++ L
Sbjct: 62  VIMMVS-DGMGPGSLSMTRSFVETLNDKEGYRLPL 95


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 504 PLNIPDNPPILSSPNLTTPAR 442
           P+ +P N  I SSP LT+P +
Sbjct: 452 PVVVPSNTTISSSPPLTSPVK 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,536
Number of Sequences: 5004
Number of extensions: 70421
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)