Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1b12
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791... 206 2e-53
05_06_0133 + 25905455-25905545,25905650-25906202,25906310-259068... 32 0.49
05_06_0139 + 25952523-25952610,25952736-25953288,25953417-259539... 31 0.65
05_06_0135 + 25921970-25922190,25922662-25922692,25924979-25925578 31 0.86
05_06_0137 + 25936516-25936606,25936716-25937268,25937436-259379... 30 2.0
01_01_0154 - 1355601-1356102,1356197-1356389,1356465-1356520,135... 30 2.0
07_01_0844 + 6855195-6855342,6855752-6855802,6856460-6856530,685... 29 3.5
07_01_0842 + 6840943-6841288,6841800-6841970,6842762-6842832,684... 29 3.5
05_05_0295 - 23912502-23912507,23912631-23912712,23913020-239131... 29 3.5
03_06_0420 + 33794045-33794192,33794831-33794901,33795093-337952... 29 3.5
01_05_0603 - 23580283-23580627,23580970-23581174,23581286-235814... 29 3.5
01_01_1138 - 9019049-9019159,9019525-9019606,9020059-9020177,902... 29 3.5
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260... 29 4.6
08_02_0439 + 17184384-17184474,17184614-17184711,17185134-171853... 28 6.1
07_03_1555 - 27669981-27670148,27670232-27670315,27670349-276703... 28 6.1
03_01_0386 + 3003053-3003173,3003351-3003666,3003847-3004159 28 6.1
>03_05_0968 +
29277122-29277445,29278389-29278505,29278957-29279114,
29279678-29279727,29279968-29280161,29280867-29281049,
29281152-29281270,29281383-29281522,29281857-29281937,
29282286-29282389
Length = 489
Score = 206 bits (502), Expect = 2e-53
Identities = 98/188 (52%), Positives = 128/188 (68%)
Frame = +2
Query: 125 IAVEGCAHGELDKIYDCIETLQEREGFKIDLLICCGDFQSVRNAADLRAMAVPEKYQRMC 304
IAVEGC HGELDK+YD + L++ EG KIDLL+CCGDFQ+VRN DL+ + V +++ M
Sbjct: 109 IAVEGCMHGELDKVYDTLRELEKAEGVKIDLLLCCGDFQAVRNENDLQCLNVKPRFREMK 168
Query: 305 TFYKYYSGEKKAPVLTLFIGGNHEASNYLQELPYGGWVAPNIYYMGRAGVVKFGELRIGG 484
+F+KYYSG+ AP T+FIGGNHEASNYL EL YGGW APNIY++G
Sbjct: 169 SFWKYYSGQAVAPYPTIFIGGNHEASNYLWELYYGGWAAPNIYFLG-------------- 214
Query: 485 LSGIFKGHDYLQGLWECLPYNQNSMRSVYHIRSLDVFRLSQLKEKLHVMLTHDWPRGITD 664
F GH +E PYN+N++RSVYH+R DV +L +KE L + ++HDWP GIT+
Sbjct: 215 ----FAGH------YERPPYNENTIRSVYHVRHYDVLKLMHVKEPLDIFMSHDWPLGITE 264
Query: 665 YGDKDHLL 688
YG+ L+
Sbjct: 265 YGNWQKLI 272
>05_06_0133 +
25905455-25905545,25905650-25906202,25906310-25906806,
25906905-25907043,25907182-25907253,25907344-25907415,
25907503-25907583,25907899-25908065,25908148-25908416,
25908512-25908638,25908752-25908820,25908928-25909120,
25909215-25909707
Length = 940
Score = 31.9 bits (69), Expect = 0.49
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 248 RNAADLRAMAVPEKYQ-RMCTFYKYYSGEKKAPVLTLFIGGNH 373
RN LR++ KY R FY Y G K PV L++G N+
Sbjct: 93 RNCYTLRSLVAGLKYLFRTTFFYGNYDGLNKLPVFDLYVGVNY 135
>05_06_0139 +
25952523-25952610,25952736-25953288,25953417-25953913,
25953942-25953955
Length = 383
Score = 31.5 bits (68), Expect = 0.65
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 248 RNAADLRAMAVPEKYQRMCTF-YKYYSGEKKAPVLTLFIGGN 370
RN LR++ KY F Y Y G KK PV L+IG N
Sbjct: 92 RNCYTLRSLTAGLKYLIRAAFVYGNYDGLKKPPVFDLYIGVN 133
>05_06_0135 + 25921970-25922190,25922662-25922692,25924979-25925578
Length = 283
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 248 RNAADLRAMAVPEKYQRMCTF-YKYYSGEKKAPVLTLFIGGN 370
RN LR++ KY TF Y Y G K P+ ++IG N
Sbjct: 161 RNCYTLRSLVAGHKYLIRATFMYGNYDGLSKLPIFDVYIGVN 202
>05_06_0137 +
25936516-25936606,25936716-25937268,25937436-25937932,
25938030-25938090,25938411-25938482,25938563-25938634,
25938730-25938810,25938918-25939081,25939174-25939442,
25939531-25939657,25939778-25939846,25939944-25940136,
25940232-25940733
Length = 916
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 248 RNAADLRAMAVPEKYQRMCTF-YKYYSGEKKAPVLTLFIGGN 370
RN LR++ KY TF Y Y G K P+ ++IG N
Sbjct: 93 RNCYTLRSLVAGLKYLIRATFMYGNYDGLSKLPIFDVYIGVN 134
>01_01_0154 -
1355601-1356102,1356197-1356389,1356465-1356520,
1356997-1357066,1357188-1357314,1357418-1357695,
1357908-1358065,1358166-1358246,1358339-1358410,
1358531-1358602,1358729-1358867,1358987-1360045,
1360170-1360257
Length = 964
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 248 RNAADLRAMAVPEKYQRMCTF-YKYYSGEKKAPVLTLFIGGNHEASNYLQELPYGG 412
RN R++A KY +F Y Y G K PV L+IG N + L GG
Sbjct: 92 RNCYTARSLAPGIKYLIRASFLYGNYDGLNKLPVFHLYIGVNFWTMVNITSLGLGG 147
>07_01_0844 +
6855195-6855342,6855752-6855802,6856460-6856530,
6856736-6856855,6857043-6857161,6857377-6857458,
6857592-6857597
Length = 198
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 503 GHDYLQGLWECLPYNQNSMRSVYHIRSLDVFRLSQLKEKLHVMLTHD 643
G D ++ LW Y QN+ ++ + S D R+ + +++LH ML D
Sbjct: 87 GQDKIRPLWR--HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 131
>07_01_0842 +
6840943-6841288,6841800-6841970,6842762-6842832,
6843068-6843187,6843654-6843772,6844045-6844126,
6844254-6844259
Length = 304
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 503 GHDYLQGLWECLPYNQNSMRSVYHIRSLDVFRLSQLKEKLHVMLTHD 643
G D ++ LW Y QN+ ++ + S D R+ + +++LH ML D
Sbjct: 193 GQDKIRPLWR--HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 237
>05_05_0295 -
23912502-23912507,23912631-23912712,23913020-23913138,
23913480-23913599,23913927-23913997,23914525-23914672
Length = 181
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 503 GHDYLQGLWECLPYNQNSMRSVYHIRSLDVFRLSQLKEKLHVMLTHD 643
G D ++ LW Y QN+ ++ + S D R+ + +++LH ML D
Sbjct: 70 GQDKIRPLWR--HYFQNTQGLIFVVDSNDRERVVEARDELHRMLNED 114
>03_06_0420 +
33794045-33794192,33794831-33794901,33795093-33795212,
33795466-33795584,33795775-33795856,33795984-33795989
Length = 181
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 503 GHDYLQGLWECLPYNQNSMRSVYHIRSLDVFRLSQLKEKLHVMLTHD 643
G D ++ LW Y QN+ ++ + S D R+ + +++LH ML D
Sbjct: 70 GQDKIRPLWR--HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 114
>01_05_0603 -
23580283-23580627,23580970-23581174,23581286-23581407,
23581493-23581675
Length = 284
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -2
Query: 335 SSPH-CNIC--KMCTCVDISRVQPLHVNQRHFVQIESHR 228
SSPH C++C MC I R+Q +RHF+ I R
Sbjct: 156 SSPHGCSLCPENMCKGKIIERIQATANGKRHFIYIGDGR 194
>01_01_1138 -
9019049-9019159,9019525-9019606,9020059-9020177,
9020977-9021096,9021313-9021383,9021801-9021948
Length = 216
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 503 GHDYLQGLWECLPYNQNSMRSVYHIRSLDVFRLSQLKEKLHVMLTHD 643
G D ++ LW Y QN+ ++ + S D R+ + +++LH ML D
Sbjct: 70 GQDKIRPLWR--HYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 114
>02_01_0362 +
2607097-2607371,2607766-2608612,2608842-2608910,
2609968-2610202,2610454-2610536,2610924-2611046,
2611326-2611379
Length = 561
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -1
Query: 510 SCPLNIPDNPPILSSPNLTTPARPM*YILGATHPPYGSSC 391
S P P PP S PN +TPA P + + PP C
Sbjct: 50 SSPCTSPPAPPETSPPNTSTPAPPAPDVPENSSPPDYDLC 89
>08_02_0439 +
17184384-17184474,17184614-17184711,17185134-17185310,
17185450-17185550,17186028-17186103,17186438-17186682,
17186784-17186880,17186990-17187076,17187268-17187362,
17187462-17187553,17187630-17187707,17187832-17187992,
17188095-17188307
Length = 536
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -3
Query: 199 FSLL*CFYAIVDFV*FSMSASFHCYFHDYLKEFTISFP*MLYVNSNNGIYIL 44
FS+L F A+ + F+M A+ +C Y+ +SF +NS ++I+
Sbjct: 383 FSILGRFGALFASIPFTMFAAIYCVMFGYVGAVGLSFMQFTNMNSMRSLFII 434
>07_03_1555 -
27669981-27670148,27670232-27670315,27670349-27670360,
27670683-27670761,27670840-27671078,27671167-27671260,
27671342-27671484,27671688-27671786,27671870-27671998,
27672123-27672197,27672308-27672520,27672581-27672676,
27673282-27673380,27673600-27673839,27674212-27674322,
27674429-27674626,27674720-27674835,27675076-27675193,
27675761-27675866,27675972-27676030,27676259-27676388,
27676730-27676887,27677672-27677887,27677972-27678082,
27678313-27678472,27679364-27679509,27679603-27679695,
27680610-27680706,27681224-27681294,27681407-27681505,
27682037-27682168,27682287-27682729,27683252-27683564,
27684301-27684549
Length = 1631
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Frame = +2
Query: 287 KYQRMCTFYKYYSGEKKA---PVLTLFIGGNHEAS----NYLQELPYGGWVAPNIYYMGR 445
KY + FY YY G+ +A P L LF G + N L+ Y +Y
Sbjct: 409 KYPEVIDFYDYYKGQMEAWDGPALLLFSDGRTVGACLDRNGLRPARYWRTSDDFVYVASE 468
Query: 446 AGVVKFGELRI 478
GV+ E ++
Sbjct: 469 VGVIPMDESKV 479
>03_01_0386 + 3003053-3003173,3003351-3003666,3003847-3004159
Length = 249
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 290 YQRMCTFYKYYSGEKKAPVLTLFIGGNHEASNYLQELPYGGW 415
Y +C + K SG + +T+ G N NY +LPYGGW
Sbjct: 76 YLIICNYDKAPSGCRMGTAITV-TGTNFCPPNY--DLPYGGW 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,546,814
Number of Sequences: 37544
Number of extensions: 445005
Number of successful extensions: 1004
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -