Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1b12
(690 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC009472-1|AAH09472.1| 544|Homo sapiens debranching enzyme homo... 293 5e-79
AF180919-1|AAD53327.2| 544|Homo sapiens RNA lariat debranching ... 293 5e-79
AK001860-1|BAA91947.1| 538|Homo sapiens protein ( Homo sapiens ... 55 2e-07
BC008746-1|AAH08746.1| 538|Homo sapiens CWF19L1 protein protein. 54 6e-07
BC014123-1|AAH14123.1| 615|Homo sapiens hypothetical protein FL... 30 6.8
BC012053-1|AAH12053.1| 615|Homo sapiens hypothetical protein FL... 30 6.8
AY358660-1|AAQ89023.1| 615|Homo sapiens AVYV493 protein. 30 6.8
AK024573-1|BAB14930.1| 615|Homo sapiens protein ( Homo sapiens ... 30 6.8
AB075870-1|BAD38652.1| 810|Homo sapiens putative protein produc... 30 6.8
>BC009472-1|AAH09472.1| 544|Homo sapiens debranching enzyme homolog
1 (S. cerevisiae) protein.
Length = 544
Score = 293 bits (718), Expect = 5e-79
Identities = 125/190 (65%), Positives = 157/190 (82%)
Frame = +2
Query: 119 MKIAVEGCAHGELDKIYDCIETLQEREGFKIDLLICCGDFQSVRNAADLRAMAVPEKYQR 298
M++AV GC HGELDKIY+ + + R +DLL+CCGDFQ+VRN ADLR MAVP KY+
Sbjct: 1 MRVAVAGCCHGELDKIYETLALAERRGPGPVDLLLCCGDFQAVRNEADLRCMAVPPKYRH 60
Query: 299 MCTFYKYYSGEKKAPVLTLFIGGNHEASNYLQELPYGGWVAPNIYYMGRAGVVKFGELRI 478
M TFY+YYSGEKKAPVLTLFIGGNHEASN+LQELPYGGWVAPNIYY+G AGVVK+ +RI
Sbjct: 61 MQTFYRYYSGEKKAPVLTLFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRI 120
Query: 479 GGLSGIFKGHDYLQGLWECLPYNQNSMRSVYHIRSLDVFRLSQLKEKLHVMLTHDWPRGI 658
GG+SGIFK HDY +G +EC PYN +++RS+YH+R+++V++L QLK+ + + L+HDWPR I
Sbjct: 121 GGISGIFKSHDYRKGHFECPPYNSSTIRSIYHVRNIEVYKLKQLKQPIDIFLSHDWPRSI 180
Query: 659 TDYGDKDHLL 688
YG+K LL
Sbjct: 181 YHYGNKKQLL 190
>AF180919-1|AAD53327.2| 544|Homo sapiens RNA lariat debranching
enzyme protein.
Length = 544
Score = 293 bits (718), Expect = 5e-79
Identities = 125/190 (65%), Positives = 157/190 (82%)
Frame = +2
Query: 119 MKIAVEGCAHGELDKIYDCIETLQEREGFKIDLLICCGDFQSVRNAADLRAMAVPEKYQR 298
M++AV GC HGELDKIY+ + + R +DLL+CCGDFQ+VRN ADLR MAVP KY+
Sbjct: 1 MRVAVAGCCHGELDKIYETLALAERRGPGPVDLLLCCGDFQAVRNEADLRCMAVPPKYRH 60
Query: 299 MCTFYKYYSGEKKAPVLTLFIGGNHEASNYLQELPYGGWVAPNIYYMGRAGVVKFGELRI 478
M TFY+YYSGEKKAPVLTLFIGGNHEASN+LQELPYGGWVAPNIYY+G AGVVK+ +RI
Sbjct: 61 MQTFYRYYSGEKKAPVLTLFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRI 120
Query: 479 GGLSGIFKGHDYLQGLWECLPYNQNSMRSVYHIRSLDVFRLSQLKEKLHVMLTHDWPRGI 658
GG+SGIFK HDY +G +EC PYN +++RS+YH+R+++V++L QLK+ + + L+HDWPR I
Sbjct: 121 GGISGIFKSHDYRKGHFECPPYNSSTIRSIYHVRNIEVYKLKQLKQPIDIFLSHDWPRSI 180
Query: 659 TDYGDKDHLL 688
YG+K LL
Sbjct: 181 YHYGNKKQLL 190
>AK001860-1|BAA91947.1| 538|Homo sapiens protein ( Homo sapiens
cDNA FLJ10998 fis, clone PLACE1002465. ).
Length = 538
Score = 55.2 bits (127), Expect = 2e-07
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 2/187 (1%)
Frame = +2
Query: 119 MKIAVEGCAHGELDKIYDCIETLQEREGFKIDLLICCGDFQSVRNAADLRAMAVPEKYQR 298
+++ G G+ D +++ ++ +Q++ G DLL+C G+F A+
Sbjct: 6 LRLLACGDVEGKFDILFNRVQAIQKKSG-NFDLLLCVGNFFGSTQDAE------------ 52
Query: 299 MCTFYKYYSGEKKAPVLTLFIGGNH-EASNYLQELPYGGWVAPNIYYMGRAGVVKFGE-L 472
+ +Y +G KKAP+ T +G N+ E Y Q+ G +A NI Y+GR G+ L
Sbjct: 53 ---WEEYKTGIKKAPIQTYVLGANNQETVKYFQDAD-GCELAENITYLGRKGIFTGSSGL 108
Query: 473 RIGGLSGIFKGHDYLQGLWECLPYNQNSMRSVYHIRSLDVFRLSQLKEKLHVMLTHDWPR 652
+I LSG + L E +P S + V +R + + SQ K + ++LT WP+
Sbjct: 109 QIVYLSG-------TESLNEPVPGYSFSPKDVSSLRMM-LCTTSQFK-GVDILLTSPWPK 159
Query: 653 GITDYGD 673
+ ++G+
Sbjct: 160 CVGNFGN 166
>BC008746-1|AAH08746.1| 538|Homo sapiens CWF19L1 protein protein.
Length = 538
Score = 53.6 bits (123), Expect = 6e-07
Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 2/187 (1%)
Frame = +2
Query: 119 MKIAVEGCAHGELDKIYDCIETLQEREGFKIDLLICCGDFQSVRNAADLRAMAVPEKYQR 298
+++ G G+ D +++ ++ +Q++ G DLL+C G+F A+
Sbjct: 6 LRLLACGDVEGKFDILFNRVQAIQKKSG-NFDLLLCVGNFFGSTQDAE------------ 52
Query: 299 MCTFYKYYSGEKKAPVLTLFIGGNH-EASNYLQELPYGGWVAPNIYYMGRAGVVKFGE-L 472
+ +Y +G KK P+ T +G N+ E Y Q+ G +A NI Y+GR G+ L
Sbjct: 53 ---WEEYKTGIKKVPIQTYVLGANNQETVKYFQDAD-GCELAENITYLGRKGIFTGSSGL 108
Query: 473 RIGGLSGIFKGHDYLQGLWECLPYNQNSMRSVYHIRSLDVFRLSQLKEKLHVMLTHDWPR 652
+I LSG + L E +P S + V +R + + SQ K + ++LT WP+
Sbjct: 109 QIVYLSG-------TESLNEPVPGYSFSPKDVSSLRMM-LCTTSQFK-GVDILLTSPWPK 159
Query: 653 GITDYGD 673
+ ++G+
Sbjct: 160 CVGNFGN 166
>BC014123-1|AAH14123.1| 615|Homo sapiens hypothetical protein
FLJ20920 protein.
Length = 615
Score = 30.3 bits (65), Expect = 6.8
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = +1
Query: 337 GTCINIIYWWKP*SFKLSTGASVWWVGGSQYILHGTCWCC*VWRTEDWWIIRNIQRA*LP 516
G C+ + YW +P + + W+ G ++ +C V R++D IIR + P
Sbjct: 465 GYCVMLGYWGEPQKTEEAVDQDKWYWTGDVATMNEQGFCKIVGRSKD-MIIRGGENI-YP 522
Query: 517 ARPLGMFALQPKLHEVCV 570
A F PK+ EV V
Sbjct: 523 AELEDFFHTHPKVQEVQV 540
>BC012053-1|AAH12053.1| 615|Homo sapiens hypothetical protein
FLJ20920 protein.
Length = 615
Score = 30.3 bits (65), Expect = 6.8
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = +1
Query: 337 GTCINIIYWWKP*SFKLSTGASVWWVGGSQYILHGTCWCC*VWRTEDWWIIRNIQRA*LP 516
G C+ + YW +P + + W+ G ++ +C V R++D IIR + P
Sbjct: 465 GYCVMLGYWGEPQKTEEAVDQDKWYWTGDVATMNEQGFCKIVGRSKD-MIIRGGENI-YP 522
Query: 517 ARPLGMFALQPKLHEVCV 570
A F PK+ EV V
Sbjct: 523 AELEDFFHTHPKVQEVQV 540
>AY358660-1|AAQ89023.1| 615|Homo sapiens AVYV493 protein.
Length = 615
Score = 30.3 bits (65), Expect = 6.8
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = +1
Query: 337 GTCINIIYWWKP*SFKLSTGASVWWVGGSQYILHGTCWCC*VWRTEDWWIIRNIQRA*LP 516
G C+ + YW +P + + W+ G ++ +C V R++D IIR + P
Sbjct: 465 GYCVMLGYWGEPQKTEEAVDQDKWYWTGDVATMNEQGFCKIVGRSKD-MIIRGGENI-YP 522
Query: 517 ARPLGMFALQPKLHEVCV 570
A F PK+ EV V
Sbjct: 523 AELEDFFHTHPKVQEVQV 540
>AK024573-1|BAB14930.1| 615|Homo sapiens protein ( Homo sapiens
cDNA: FLJ20920 fis, clone ADSE00877. ).
Length = 615
Score = 30.3 bits (65), Expect = 6.8
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = +1
Query: 337 GTCINIIYWWKP*SFKLSTGASVWWVGGSQYILHGTCWCC*VWRTEDWWIIRNIQRA*LP 516
G C+ + YW +P + + W+ G ++ +C V R++D IIR + P
Sbjct: 465 GYCVMLGYWGEPQKTEEAVDQDKWYWTGDVATMNEQGFCKIVGRSKD-MIIRGGENI-YP 522
Query: 517 ARPLGMFALQPKLHEVCV 570
A F PK+ EV V
Sbjct: 523 AELEDFFHTHPKVQEVQV 540
>AB075870-1|BAD38652.1| 810|Homo sapiens putative protein product
of HMFN0672 protein.
Length = 810
Score = 30.3 bits (65), Expect = 6.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 238 SICTKCR*FTCNGCTREISTHVHILQILQWGEE 336
SICT C +GC + +H+L +W EE
Sbjct: 133 SICTSCIVQVSSGCCVQYEAKIHLLSDQEWREE 165
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,238,493
Number of Sequences: 237096
Number of extensions: 2510859
Number of successful extensions: 8333
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8333
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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