Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1b12
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U63636-1|AAC47433.1| 500|Caenorhabditis elegans RNA lariat debr... 246 2e-65
AC006625-2|AAK68279.2| 500|Caenorhabditis elegans Lariat debran... 246 2e-65
AY519855-1|AAR89636.1| 180|Caenorhabditis elegans ADP-ribosylat... 33 0.25
AF045644-6|AAC02598.1| 180|Caenorhabditis elegans Adp-ribosylat... 33 0.25
Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical pr... 29 3.1
AC024755-5|AAK84601.1| 153|Caenorhabditis elegans Hypothetical ... 28 5.5
Z69662-6|CAA93501.1| 283|Caenorhabditis elegans Hypothetical pr... 28 7.2
AC024765-2|AAF60523.3| 345|Caenorhabditis elegans Hypothetical ... 28 7.2
>U63636-1|AAC47433.1| 500|Caenorhabditis elegans RNA lariat
debranching enzyme protein.
Length = 500
Score = 246 bits (601), Expect = 2e-65
Identities = 110/197 (55%), Positives = 146/197 (74%), Gaps = 8/197 (4%)
Frame = +2
Query: 119 MKIAVEGCAHGELDKIYDCIETLQEREGFKIDLLICCGDFQSVRNAADLRAMAVPEKYQR 298
++IAV GC+HGE+D IY+ + ++++ G+K DLLICCGD+Q+VRN DL M++P KY+
Sbjct: 41 IRIAVVGCSHGEMDAIYETMTLIEQKNGYKFDLLICCGDYQAVRNYGDLPHMSIPPKYRS 100
Query: 299 MCTFYKYYSGEKKAPVLTLFIGGNHEASNYLQELPYGGWVAPNIYYMGRAGVVKFGELRI 478
+ TFYKYYSGE+KAPVLTLFIGGNHEAS YL ELP GGWVAPNIYYMG A ++F LRI
Sbjct: 101 LQTFYKYYSGEQKAPVLTLFIGGNHEASGYLCELPNGGWVAPNIYYMGFANCIRFANLRI 160
Query: 479 GGLSGIFKGHDYLQGLWECLPYNQNSMRSVYHIRSLDVFRLSQLK--------EKLHVML 634
GLSGIF D+ +E +++ ++S YH+R++D+FRL QLK + +ML
Sbjct: 161 AGLSGIFSQGDFQFSHYERPSFSERDVKSAYHVRNVDMFRLRQLKSDNENKISNPIDIML 220
Query: 635 THDWPRGITDYGDKDHL 685
+HDWP GI D+GDK+ L
Sbjct: 221 SHDWPGGIPDFGDKEWL 237
>AC006625-2|AAK68279.2| 500|Caenorhabditis elegans Lariat
debranching enzyme relatedprotein 1 protein.
Length = 500
Score = 246 bits (601), Expect = 2e-65
Identities = 110/197 (55%), Positives = 146/197 (74%), Gaps = 8/197 (4%)
Frame = +2
Query: 119 MKIAVEGCAHGELDKIYDCIETLQEREGFKIDLLICCGDFQSVRNAADLRAMAVPEKYQR 298
++IAV GC+HGE+D IY+ + ++++ G+K DLLICCGD+Q+VRN DL M++P KY+
Sbjct: 41 IRIAVVGCSHGEMDAIYETMTLIEQKNGYKFDLLICCGDYQAVRNYGDLPHMSIPPKYRS 100
Query: 299 MCTFYKYYSGEKKAPVLTLFIGGNHEASNYLQELPYGGWVAPNIYYMGRAGVVKFGELRI 478
+ TFYKYYSGE+KAPVLTLFIGGNHEAS YL ELP GGWVAPNIYYMG A ++F LRI
Sbjct: 101 LQTFYKYYSGEQKAPVLTLFIGGNHEASGYLCELPNGGWVAPNIYYMGFANCIRFANLRI 160
Query: 479 GGLSGIFKGHDYLQGLWECLPYNQNSMRSVYHIRSLDVFRLSQLK--------EKLHVML 634
GLSGIF D+ +E +++ ++S YH+R++D+FRL QLK + +ML
Sbjct: 161 AGLSGIFSQGDFQFSHYERPSFSERDVKSAYHVRNVDMFRLRQLKSDNENKISNPIDIML 220
Query: 635 THDWPRGITDYGDKDHL 685
+HDWP GI D+GDK+ L
Sbjct: 221 SHDWPGGIPDFGDKEWL 237
>AY519855-1|AAR89636.1| 180|Caenorhabditis elegans ADP-ribosylation
factor related(20.5 kD) (arf-3) protein.
Length = 180
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 503 GHDYLQGLWECLPYNQNSMRSVYHIRSLDVFRLSQLKEKLHVMLTHDWPRGIT 661
G D ++ LW Y QN+ ++ + S D R+ + +E+LH ML D R T
Sbjct: 70 GQDKIRPLWR--HYFQNTQGLIFVVDSNDKERIEESREELHKMLNEDELRDAT 120
>AF045644-6|AAC02598.1| 180|Caenorhabditis elegans Adp-ribosylation
factor relatedprotein 3 protein.
Length = 180
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 503 GHDYLQGLWECLPYNQNSMRSVYHIRSLDVFRLSQLKEKLHVMLTHDWPRGIT 661
G D ++ LW Y QN+ ++ + S D R+ + +E+LH ML D R T
Sbjct: 70 GQDKIRPLWR--HYFQNTQGLIFVVDSNDKERIEESREELHKMLNEDELRDAT 120
>Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical
protein T20D3.8 protein.
Length = 282
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 148 MSASFHCYFHDY-LKEFTISFP*MLYVNSNNGIYIL 44
++A F C+FHDY +K +S+P + ++ I++L
Sbjct: 144 ITAIFSCFFHDYGVKAPVVSYPTSVSTGLSSAIFLL 179
>AC024755-5|AAK84601.1| 153|Caenorhabditis elegans Hypothetical
protein Y34B4A.5 protein.
Length = 153
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 476 IGGLSGIFKGHDYLQGLWECL-PYNQNSMRSVYHIRS 583
I G+SG+FK D +ECL P ++ YH+++
Sbjct: 3 INGISGLFKVCDAFNKYYECLGPARRDCTSISYHVKA 39
>Z69662-6|CAA93501.1| 283|Caenorhabditis elegans Hypothetical
protein F56D5.10 protein.
Length = 283
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/45 (33%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +3
Query: 159 TKSTIA*KHYKRE-KVLRLIC*YVAVTFNLYEMPLIYVQWLYPRN 290
T S+I+ H KRE +++R C ++ V ++YE+ ++++ LYP++
Sbjct: 177 TASSISLSHVKRENEMIRQAC-FIGVYLSVYEILYLHMR-LYPQH 219
>AC024765-2|AAF60523.3| 345|Caenorhabditis elegans Hypothetical
protein Y39A3CR.6 protein.
Length = 345
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 504 PLNIPDNPPILSSPNLTTPARP 439
P+ +P PPIL+SP TP P
Sbjct: 196 PVTVPKAPPILASPLQKTPPPP 217
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,183,739
Number of Sequences: 27780
Number of extensions: 398785
Number of successful extensions: 961
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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