Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1b09
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical pr...   104   5e-23
U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like...    33   0.22 
AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3 ...    33   0.22 
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p...    32   0.30 
U56965-2|AAB52667.3|  581|Caenorhabditis elegans Hypothetical pr...    29   2.1  
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu...    28   4.8  
U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical
           protein C04F12.4 protein.
          Length = 135

 Score =  104 bits (250), Expect = 5e-23
 Identities = 55/131 (41%), Positives = 78/131 (59%)
 Frame = +2

Query: 47  MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 226
           M F R V+ GRV  +A G  +GKL ++V+VID  R  +DGP S V R    L  L LTKF
Sbjct: 1   MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60

Query: 227 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRN 406
            LK      T+ V+ A+  AK+ E + ++QWA+K+A +  RA++TD++R+KL  A+  RN
Sbjct: 61  VLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRN 120

Query: 407 RARTAVFKSLK 439
           R        LK
Sbjct: 121 RIVRVELAKLK 131


>U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like
           protein 3 protein.
          Length = 208

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +2

Query: 221 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 394
           +FR+  K A  A   + +KA T     EK  +   AQK A  EK+A+ T   + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163

Query: 395 VKRNRARTAVFKSLKVKAARA 457
           VK+ ++   + K    K A++
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKS 184


>AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3
           protein.
          Length = 208

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +2

Query: 221 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 394
           +FR+  K A  A   + +KA T     EK  +   AQK A  EK+A+ T   + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163

Query: 395 VKRNRARTAVFKSLKVKAARA 457
           VK+ ++   + K    K A++
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKS 184


>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
           protein Y49E10.19 protein.
          Length = 1159

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 308 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAAR 454
           E+QWA     ++ RA +T+YDR K    R+      T     L V  AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855


>U56965-2|AAB52667.3|  581|Caenorhabditis elegans Hypothetical
           protein C15H9.5 protein.
          Length = 581

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 606 ILYSLLKICLSHITCRRHKNNYFLAGFLVAFLVRTFFAAALGIFF 472
           ILY  L +  SH+ CR +  N +     +A LV   F  AL +FF
Sbjct: 266 ILYFGLAVYWSHLLCRSNSENIYRVHKFMAVLV---FLKALSVFF 307


>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
           protein 1 protein.
          Length = 1010

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = -2

Query: 484 RDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEP 371
           RDI LA  TS RS HL + +  +PGT  L S +  L P
Sbjct: 746 RDI-LAMNTSVRSPHLNSSKTAAPGTPSLMSQNVQLPP 782


>U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical
           protein W04D12.1 protein.
          Length = 85

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 293 NEKWTESQWAQKLANKEKRAQMTDYDRFK 379
           N KW     A K+A KEK+ +M D ++ K
Sbjct: 43  NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,680,017
Number of Sequences: 27780
Number of extensions: 288231
Number of successful extensions: 869
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)