Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1b04
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 29 0.89
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 29 1.2
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 1.5
12_01_0203 + 1520079-1520302,1522346-1522405,1522794-1523016,152... 27 4.7
12_01_0538 - 4225321-4225689 26 6.2
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989... 26 6.2
11_01_0680 - 5554012-5554028,5555525-5555678,5555790-5555951,555... 26 8.3
03_02_0248 + 6783643-6783794,6784912-6784947,6785977-6785998,678... 26 8.3
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 29.1 bits (62), Expect = 0.89
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +1
Query: 121 ESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 276
E G+NV+ CE A+ + +S +V + W + L+ L ++ +
Sbjct: 182 EPEAGANVVKSCESLFAALVGLTAVSLHLVETFLIKWRKEKLTQLTVYVFQM 233
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 10 MKKVYK-HLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDESAFGSNVINYC 156
++KVY+ + +NEG+ +H+ F + MY+ Y + ++ C
Sbjct: 303 LEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYESMMNLAEEIVTRC 352
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +1
Query: 106 VNLVDESAFGSNVINYCEQF--ITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNLN 279
V +VDE +GS + Y E+ I FE F ++ + P++ E N+ +LL+ + +L
Sbjct: 856 VPIVDEEFYGSKLRGYVEELRAIGVQFE-FANANLHIADQPLSME--NVILLLQWIKDLR 912
Query: 280 LIGIEI 297
IG+++
Sbjct: 913 SIGVQL 918
>12_01_0203 +
1520079-1520302,1522346-1522405,1522794-1523016,
1523038-1523434,1523522-1523781,1523866-1524011,
1524044-1524317,1524501-1525547
Length = 876
Score = 26.6 bits (56), Expect = 4.7
Identities = 25/94 (26%), Positives = 39/94 (41%)
Frame = +1
Query: 7 FMKKVYKHLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDESAFGSNVINYCEQFITAIFEI 186
F K K+LV+ +E + HV+ KT L SA +I + + +
Sbjct: 92 FSKLSLKNLVIPDESLTRLEHVV-------KTLTQLCATSATFIELIKMDDSKTNQLHKA 144
Query: 187 FTLSSKIVVAVPVNWENDNLSVLLKHLHNLNLIG 288
SS + V VPV ++ +L H H + IG
Sbjct: 145 AEASSHLPVDVPVFGRDEVKEFILNHDHPESSIG 178
>12_01_0538 - 4225321-4225689
Length = 122
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 219 HGHNDFTAERKNFENGRDKLFAIVNNVAAERRLV 118
H D++ R + GR + FA+VNN+ RR V
Sbjct: 8 HWIQDYSVGRVTDDQGR-RAFALVNNLGGTRRAV 40
>04_04_1062 -
30498158-30498271,30498358-30498518,30498606-30498924,
30499412-30499477,30499601-30499726,30499821-30499961,
30500482-30500535,30501508-30501636,30501733-30501870,
30501993-30502061,30502135-30502203,30502468-30502623,
30503795-30503895,30503986-30504136,30504475-30504520,
30504539-30504637,30504796-30504928,30505018-30505195,
30505282-30505524,30505612-30505680,30505986-30506085,
30506898-30507007
Length = 923
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 112 LVDESAFGSNVINYCEQFITAIFE 183
L+DE+ GSNVI E F T +F+
Sbjct: 329 LIDENRKGSNVIKVIEGFETIMFK 352
>11_01_0680 -
5554012-5554028,5555525-5555678,5555790-5555951,
5556130-5557148,5559808-5559835,5560996-5561079,
5561442-5561654,5562267-5562569
Length = 659
Score = 25.8 bits (54), Expect = 8.3
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +1
Query: 238 DNLSVLLKHLHNLNLIGIEIVN 303
DNL+++ +HL L L G+++++
Sbjct: 71 DNLAIVSRHLEKLQLTGVKLMH 92
>03_02_0248 +
6783643-6783794,6784912-6784947,6785977-6785998,
6786368-6786440,6786541-6786638
Length = 126
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 213 HNDFTAERKNFENGRDKLFAIVNNVAAERRLVD 115
+ FT+ N N + K A NN+ AE RLVD
Sbjct: 93 YEGFTSSTSNHVNLKGKDMATTNNI-AEERLVD 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,430,763
Number of Sequences: 37544
Number of extensions: 148083
Number of successful extensions: 307
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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