Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1b01
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 31 1.2
08_01_0077 + 546473-546512,546739-547013,547772-547885,548002-55... 30 1.6
05_07_0089 - 27619053-27620138 30 1.6
12_02_0235 + 16079042-16079410 29 2.9
12_01_0730 + 6505759-6508806 29 2.9
02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515... 29 2.9
12_01_0714 + 6223269-6226250 29 5.0
09_04_0607 - 18918624-18918710,18918918-18919034,18919652-189200... 29 5.0
08_01_0612 + 5378190-5378251,5378926-5379244,5379381-5379671,538... 29 5.0
03_04_0163 + 17865529-17865801,17866030-17866102,17866251-17866270 29 5.0
01_06_0078 + 26223797-26223803,26224000-26224278,26224391-262246... 29 5.0
05_04_0045 - 17477470-17477570,17477753-17477774,17477942-174780... 28 6.6
12_01_0969 - 9765114-9765664,9767963-9768512,9769507-9769561,976... 28 8.7
03_05_0613 + 26124714-26124857,26125692-26126330,26126455-261266... 28 8.7
03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550... 28 8.7
>03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -1
Query: 367 FCFVSLFTIAAGKLPNTKRLLHTWKLKQVFSSFNGSKLPSSLKTLIIVFNTSCVKI 200
FC T + K P+ +HTWKLK FS K S LK L V ++S + +
Sbjct: 1072 FCSNGSITNSQSKQPDEIYTVHTWKLKW-FSEETVVKFISLLKALYSVSSSSSLPV 1126
>08_01_0077 +
546473-546512,546739-547013,547772-547885,548002-550245
Length = 890
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 51 IKYAIDPTNKIVIEQVDNVDAFVHILEPG 137
+ +I+ NKI I D VD +H+LE G
Sbjct: 621 LNLSINDNNKIAIANADAVDPLIHVLETG 649
>05_07_0089 - 27619053-27620138
Length = 361
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 401 KASFGCDDVSSCWRKRMAATGDGNSRSVSAVGTHKGAERRPC 526
+A F C S+C ++ T N+ V+ +G KG PC
Sbjct: 24 RALFSCGIFSTCTHPALSPTATPNNNVVAGMGGAKGGSGTPC 65
>12_02_0235 + 16079042-16079410
Length = 122
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 395 RRKASFGCDDVSSCWRKRMAATGDGNSRSVSAVGTHKGAERR 520
+RKA G D + MAA +G S V +G H+ AERR
Sbjct: 40 QRKAGTGGDGSE---KTMMAARAEGGSNWVEVIGCHEKAERR 78
>12_01_0730 + 6505759-6508806
Length = 1015
Score = 29.5 bits (63), Expect = 2.9
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +3
Query: 159 LSRYHQFPGVVSSIIFTQLVLNTIISVLSE--DGSLLPLKLENTCFNFHVCNKRFVFGNL 332
LSR ++F G IIF L TI + G+L + + N + N F G +
Sbjct: 297 LSR-NKFQGSFPPIIFQHKKLRTINLSKNPGISGNLPNFSQDTSLENLFLNNTNFT-GTI 354
Query: 333 PAAIVNNETKQKLRIGSPIFAG 398
P +I+N + +KL +G+ F+G
Sbjct: 355 PGSIINLISVKKLDLGASGFSG 376
>02_01_0690 -
5152224-5152386,5152490-5152687,5152815-5153014,
5153122-5153223,5153414-5153550,5153688-5153798,
5156092-5156344,5157954-5158052,5158449-5158739
Length = 517
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 474 EFPSPVAAIRFRQHDETSSQPKLAFRRQKLEIQCAVFALFH 352
E PS A RF+QH S P FR+ +EI+ ++ H
Sbjct: 301 ELPSTFKAFRFQQH-RWSCGPANLFRKMLMEIKVTIWKKIH 340
>12_01_0714 + 6223269-6226250
Length = 993
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 171 HQFPGVVSSIIFTQLVLNTIISVLSE--DGSLLPLKLENTCFNFHVCNKRFVFGNLPAAI 344
++F G IIF L TI + G+L + + N + N F G +P +I
Sbjct: 278 NKFQGSFPPIIFQHKKLRTINLSKNPGISGNLPNFSQDTSLENLFLNNTNFT-GTIPGSI 336
Query: 345 VNNETKQKLRIGSPIFAG 398
+N + +KL +G+ F+G
Sbjct: 337 INLISVKKLDLGASGFSG 354
>09_04_0607 -
18918624-18918710,18918918-18919034,18919652-18920030,
18921220-18921359
Length = 240
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 81 IVIEQVDNVDAFVHILEPGQEVFDETLSRYHQFPGVVSSIIF 206
I+++ + + F +E E+F+ +LS Q+PGV + + F
Sbjct: 179 ILLDDLSLANQFQTFIERIDEIFEVSLSTNQQYPGVYALLFF 220
>08_01_0612 +
5378190-5378251,5378926-5379244,5379381-5379671,
5380520-5380768,5380843-5380967,5381487-5381585,
5381668-5382352
Length = 609
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 480 ASRLSGHIKVPNGVRVEKLRPNMSVYGTVQLPYDKI 587
AS + G K ++ + L+PN+ VYGT+ Y K+
Sbjct: 400 ASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKL 435
>03_04_0163 + 17865529-17865801,17866030-17866102,17866251-17866270
Length = 121
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -1
Query: 175 WWYRLSVSSNTS*PGSRICTNASTLSTCSITILFVGSIAYLILY 44
WW+ + S+ S P + + S + LFVG++A ++++
Sbjct: 78 WWWSIGASAVDSQPWRSVTLSGSRSGASLLLGLFVGNVAIILIW 121
>01_06_0078 +
26223797-26223803,26224000-26224278,26224391-26224609,
26226846-26226917,26228073-26228221,26228859-26229135,
26230922-26231187
Length = 422
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +3
Query: 381 SPIFAGEKLVSVVTTFHRVGENEWLLPVTGIQEASRLSGHIKVPNGVRVEKLRPNMSVYG 560
SP F E+ V V T H E W + G+ L+GH N + PN +++G
Sbjct: 131 SPDFYRERGVHVRDTVHLDMEMNWFRDLLGLLCPDDLAGHNLFEN--EENFINPNRTIHG 188
Query: 561 T 563
T
Sbjct: 189 T 189
>05_04_0045 -
17477470-17477570,17477753-17477774,17477942-17478017,
17478288-17478397,17478674-17478743,17478847-17479178
Length = 236
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 401 KASFG-CDDVSSCWRKRMAATGDGNSRSVSAVG 496
KAS+ DD S W R+AA + +S S SA G
Sbjct: 66 KASWSVADDEESRWLDRLAADAESSSSSASAAG 98
>12_01_0969 -
9765114-9765664,9767963-9768512,9769507-9769561,
9769918-9769980,9770547-9771325
Length = 665
Score = 27.9 bits (59), Expect = 8.7
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 7/112 (6%)
Frame = +3
Query: 195 SIIFTQLVLNTIISVLSEDGSLLPLKLENTCFNFHVCNKRFVFGNLPAAIVNNE------ 356
SI TQ NT + + G + L TC + +K + + P + +N
Sbjct: 524 SICLTQKSSNTTFLLTNVYGPMEDATLMQTCSSQTTTSKHSLH-HAPDMLFSNHCPLLLS 582
Query: 357 -TKQKLRIGSPIFAGEKLVSVVTTFHRVGENEWLLPVTGIQEASRLSGHIKV 509
TKQ LR P F E + F V + W PV+ RLS +K+
Sbjct: 583 PTKQLLR--KPTFRFENFWPRLLGFLEVVQTAWSQPVSASHPVKRLSTKLKM 632
>03_05_0613 +
26124714-26124857,26125692-26126330,26126455-26126695,
26126913-26127496
Length = 535
Score = 27.9 bits (59), Expect = 8.7
Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Frame = +3
Query: 9 SYTLNRTDVMELYNIKYAIDPTNKIVIEQVDNVDAFVHILEPGQEVFDE-----TLSRYH 173
SYT ++ EL K +P + +E+ + + ++L+ V + +H
Sbjct: 419 SYTYEDDNMEELDQKKVECEPNKEAALEKFEWISDDENVLDNEDRVTGAYHGYIDIIGFH 478
Query: 174 QFPGVV--SSIIFTQLVLNTIISVLSEDGSLLPLKLENTCFNFHVCNKRFVFGNLP 335
+ ++ S + L + S + + G+L P T +N H+ N+RF+ + P
Sbjct: 479 PYKEIIFLSESLKRGLAYHLSSSKVEDIGNLYP-----TSYNIHLINERFITASFP 529
>03_02_0081 -
5506194-5506197,5506310-5507170,5507299-5507456,
5507549-5507740
Length = 404
Score = 27.9 bits (59), Expect = 8.7
Identities = 9/39 (23%), Positives = 22/39 (56%)
Frame = +3
Query: 138 QEVFDETLSRYHQFPGVVSSIIFTQLVLNTIISVLSEDG 254
+ ++D + FP + +++ QL + T ++V+ +DG
Sbjct: 197 ERLYDGRFAHVEFFPADIGAVLGNQLSIGTFLAVIDDDG 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,146,813
Number of Sequences: 37544
Number of extensions: 424836
Number of successful extensions: 1258
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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