Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1b01
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81122-5|CAB03357.1|  579|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z81064-2|CAB02963.1|  259|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U39851-14|AAF99871.2|  354|Caenorhabditis elegans Hypothetical p...    28   7.9  
U39851-13|AAL13325.1|  456|Caenorhabditis elegans Hypothetical p...    28   7.9  

>Z81122-5|CAB03357.1|  579|Caenorhabditis elegans Hypothetical
           protein T13F2.6 protein.
          Length = 579

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 268 NGSKLPSSLKTLIIVFNTSCVKIIELTTPGNWWYRLSV 155
           NGS    S K  I V +  C+ ++   TPGN W +L +
Sbjct: 69  NGSFSFDSSKKQIHVKSVKCIYMLPKATPGNKWAQLKL 106


>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +1

Query: 487 GCRDT*RCRTASVLKNCDPTCLFTGLCNCRTIK 585
           GCR T  C + S L  C P C  T    C T K
Sbjct: 233 GCRST--CSSTSTLSVCIPACQQTCRSTCSTAK 263


>Z81064-2|CAB02963.1|  259|Caenorhabditis elegans Hypothetical
           protein F16B12.2 protein.
          Length = 259

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 395 RRKASFGCDDVSSCWRKRMAATGDGNSRSVSAVG-THKGAERR 520
           +R A + C D   C  K + +  DG SR   AVG T K  ER+
Sbjct: 168 KRIARWDCSDEGYCQNKGVCSFVDGISRCRCAVGFTGKHCERK 210


>U39851-14|AAF99871.2|  354|Caenorhabditis elegans Hypothetical
           protein C23G10.1a protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +3

Query: 363 QKLRIGSPIFAGEKLVSVVTTFHRVGENEWLLPVTGIQEASRLSGHIKVPNGVRVEKLR 539
           Q ++ G   FAG+KLV+V +  H +        V  +     +S  +  P  +RVE+++
Sbjct: 283 QVVQDGYEFFAGKKLVTVFSAPHYMQSFTNSAAVCKVSAGLEVSFEVLKPEDIRVEEIK 341


>U39851-13|AAL13325.1|  456|Caenorhabditis elegans Hypothetical
           protein C23G10.1b protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +3

Query: 363 QKLRIGSPIFAGEKLVSVVTTFHRVGENEWLLPVTGIQEASRLSGHIKVPNGVRVEKLR 539
           Q ++ G   FAG+KLV+V +  H +        V  +     +S  +  P  +RVE+++
Sbjct: 385 QVVQDGYEFFAGKKLVTVFSAPHYMQSFTNSAAVCKVSAGLEVSFEVLKPEDIRVEEIK 443


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,809,314
Number of Sequences: 27780
Number of extensions: 398591
Number of successful extensions: 1203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)