Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1a22
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha... 29 0.60
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 28 1.4
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 28 1.4
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 27 3.2
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c... 27 3.2
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 4.2
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 26 4.2
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 25 7.4
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 25 9.7
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 9.7
>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 496
Score = 29.1 bits (62), Expect = 0.60
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 75 LTSYFDLKDNEHVPSEPM--AFIRNYLNCTFDLLDDAVLM 188
++++ DL DN H+P + M I LN TFD D LM
Sbjct: 332 ISNFLDLNDNFHLPLQIMDPRKIAQELNLTFDGFQDYCLM 371
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 411 AEFGKVFKNKIFVNINNYGCVLAGSAGFLFDDAYVDWNGVRMCAAPRL 554
A++GK+ K K F+ + G ++ +G +F DW P+L
Sbjct: 59 AKYGKLKKTKKFIAFDLDGTLIKTKSGRVFSKDAADWTWWHPSVVPKL 106
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 501 DDAYVDWNGVRMCAAPRLD 557
DDA++DWN +R C+A LD
Sbjct: 384 DDAFMDWN-LRKCSAAALD 401
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -2
Query: 448 TNILFLNTLPNSAYRKAIILRGLDVN-RFVAYTCV 347
TNI+ N LP S++ K ++L+ L+ N +FV + V
Sbjct: 340 TNIIIENILP-SSFSKPVVLKALNGNDKFVCFLTV 373
>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 117 SEPMAFIRNYLNCTFDLLDDAVLMNYFNYLQSMQLKHLVGSTSTNIFK 260
SEPMAF+ +N + LL ++++ N ++ L+ L+ T T + K
Sbjct: 127 SEPMAFMSENVNLQYALL-NSIIDKMNNNIKKPNLEFLMPCTITKLSK 173
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 99 DNEHVPSEPMAFIRNYLNCTFDLLDDAVLMNYFNYLQSMQLKHLVGSTSTNIFKFVK 269
DN+ P E AF+R+ L D DD L + LQ +L L+ T + F K
Sbjct: 1342 DNKSTPEEREAFLRSLLEHDGD--DDHDLT--YGELQDDELNELISRTDEELVLFKK 1394
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Frame = +3
Query: 528 VRMCAAPRLDNNMHP----FRLYLLGEDMAKHFVD--NNILPP 638
+RMC+A R D +H L +L H V+ N+ILPP
Sbjct: 87 IRMCSAARTDKGVHAIVNVLGLKVLDNQPLPHVVNLVNDILPP 129
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 25.4 bits (53), Expect = 7.4
Identities = 6/14 (42%), Positives = 12/14 (85%)
Frame = +1
Query: 493 FCSTTRTWIGMVCE 534
+CS++ TW+G +C+
Sbjct: 156 YCSSSGTWVGKICK 169
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -2
Query: 367 FVAYTCVP--GFMYMRVSN--SKMSTVVRLHTNRNCGFTNLKMFVDVLPTK 227
+ AY P GF Y ++ K++ +R T+R FTN F D++ K
Sbjct: 13 YTAYRLSPLFGFEYSNLTEIGKKLTRFLRYGTDRTGYFTNSTRFADLIIEK 63
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 381 NPRKMMAFLYAEFGKVFKNKIFVNIN 458
NP K+ L+A+F F+N I N N
Sbjct: 1485 NPHKIDTSLFAKFSSQFQNIIAKNFN 1510
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,694
Number of Sequences: 5004
Number of extensions: 61292
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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