Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1a19
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    28   1.3  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    28   1.3  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    27   2.2  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.9  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   3.9  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    26   6.7  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    26   6.7  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   6.7  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    26   6.7  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.9  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    25   8.9  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   8.9  

>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 399 GFLDLFI-AVYNFGDRSNFVAFDTFHF-YTLIYNIC 298
           GF+ + I A+  F DRS  VAF +F +   L+Y IC
Sbjct: 120 GFIPVLIKAMKQFKDRSENVAFTSFRYALFLVYYIC 155


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +1

Query: 532 IFRNKADTRQIAAVVFSTLAFIHNRFHPLV---TNFTNKMEFVVTETNDTS 675
           IFR   + R    V     AFI N++ PLV   T++TN     V +TN  S
Sbjct: 93  IFRFNLNHRGYLEVKSGFRAFIENKYSPLVFHATSWTNGFSIDVQKTNPIS 143


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = -1

Query: 512 ISRVLSIAMYLLSANLIFRVS*LSKLLRFFKSNSANS*VFWIFSSLFTISVTVRTLLHLT 333
           + R+LSIA +LLS + + R+    +    +  N+  S V   +    T SV V+  L + 
Sbjct: 14  LKRILSIAFFLLSLSTLLRIVNAQQ----YVDNNIGSMVLSDYDFAETPSVRVQRALEIL 69

Query: 332 RFIFIHLSTTF 300
           R+ +     T+
Sbjct: 70  RYYYEQEDVTY 80


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
 Frame = +1

Query: 376 SDEKIQKTYELAEFDLKNLSSLESYETL-----KIKLALSKYMAMLSTLEMTQPLLEIFR 540
           ++  I+  + L    L++L+ L+S   L      + L +++     S + +   +LEI  
Sbjct: 239 NENTIEDFFGLVRARLESLNLLDSDSELLCEFPDLSLKINEDNVYASQIHLVD-ILEILT 297

Query: 541 NKADTRQIAAVVFSTLAFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENE 711
              D  +  ++VFST      R++ LV   ++     + E  D       IL   N+
Sbjct: 298 VHCDLEESFSIVFSTQPRFIARYNELVQAVSSSSNSEIDEVEDAETIDSKILEKRND 354


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 681 GNACVISFSDHKLHFVSKISNK 616
           G+AC +S  + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 684 SGNACVISFSDHKLHFVSKISNKW 613
           SGN   +S  D+K++   +  NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 79  NSKHVFDHFGCSSNYCFNNYV 141
           N   VF+H  CS  Y FNN V
Sbjct: 2   NGLRVFEHVHCSVLYKFNNIV 22


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 645 LHFVSKISN-KWMESIVYKS*CAKHHGGNLPSVCFVSKYFQQRLGHFQGAEHSHVF 481
           L +++ +S+ KW+E +  K  C K+   N  S     K F + +G+   A +   +
Sbjct: 157 LQYITGVSDTKWLEFVSAKGQCPKYLYWNNKSYLLKKKRFLKEVGNSPSAVYCRYY 212


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 993

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = -1

Query: 662  VSVTTNSILLVKLVTSGWNLLCIKANVLNTTAAICRVSALFLN 534
            +S+ TNS L VKL ++   + C+ +  + ++ ++  ++ L L+
Sbjct: 905  ISMQTNSSLSVKLNSNSNTITCVVSGTMVSSPSLANITILGLS 947


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 16/107 (14%)
 Frame = -1

Query: 755 ILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTN--SILLVKLVTSGW---NLLCIK 591
           I +  GLS ++ +  +  +  +G+P   +S VSVT N  ++    + T+GW   N  C+ 
Sbjct: 193 IFSYFGLSQQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSNYTVNTNGWTSSNFKCVD 252

Query: 590 ANVLN-------TTAAICRVSAL----FLNISNSGWVISRVLSIAMY 483
             V N       T A +  VS L      N + S  +  ++ S  +Y
Sbjct: 253 DVVANIFGLDFYTAAVLSEVSILRSFALCNATTSSSLFRQIASYGVY 299


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 644 SILLVKLVTSGWNLLCIKANV 582
           S +L  L+  GW ++C  ANV
Sbjct: 19  SCILAWLIEEGWEVICYMANV 39


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
 Frame = +1

Query: 274 SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSD-EKIQKTYELAEFDLKNLSSLESY 450
           S+  H S A  +D  +K       ++    E+  ++   IQ++      DL     L   
Sbjct: 623 SILSHNSSAGNIDDKMKSIDESTRELEKNYEVYRNEMTAIQESLSKRNQDL-----LSEM 677

Query: 451 ETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAV 573
           E ++ +L  SKY   LST  +T    ++   K + +++ ++
Sbjct: 678 EAIRKELENSKYQQQLSTDRLTNANNDVEAFKKEAKELRSI 718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,506
Number of Sequences: 5004
Number of extensions: 53391
Number of successful extensions: 161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)