Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1a18
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582          216   1e-56
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390...   205   2e-53
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337...   203   7e-53
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978           88   4e-18
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372     38   0.008
03_01_0404 + 3138624-3140096                                           31   0.70 
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043...    29   2.8  
01_07_0179 - 41814886-41815074,41815172-41815222,41815365-418154...    29   2.8  
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045...    28   6.5  
03_01_0646 + 4742398-4742994,4743681-4744085                           27   8.7  

>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
          Length = 148

 Score =  216 bits (527), Expect = 1e-56
 Identities = 90/129 (69%), Positives = 118/129 (91%)
 Frame = +2

Query: 128 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 307
           + FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI  KKADID++KRAGE T EE+E+
Sbjct: 3   EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62

Query: 308 IITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 487
           ++T+++NPRQ+K+PDWFLNR+KD  DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHY
Sbjct: 63  LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 122

Query: 488 WGLRVRGQH 514
           WGLRVRGQH
Sbjct: 123 WGLRVRGQH 131


>07_01_0525 +
           3904388-3904390,3904485-3904645,3905347-3905394,
           3905714-3905902,3906872-3906977
          Length = 168

 Score =  205 bits (500), Expect = 2e-53
 Identities = 94/151 (62%), Positives = 122/151 (80%), Gaps = 16/151 (10%)
 Frame = +2

Query: 110 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 274
           MSL+  + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI  KKADID++KR     
Sbjct: 1   MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60

Query: 275 -----------AGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLD 421
                      AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD  DG++SQ+ S+ LD
Sbjct: 61  YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALD 120

Query: 422 SKLREDLERLKKIRAHRGMRHYWGLRVRGQH 514
            KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 121 MKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 151


>03_06_0283 -
           32832572-32832677,32833343-32833531,32833582-32833796,
           32833900-32833902
          Length = 170

 Score =  203 bits (496), Expect = 7e-53
 Identities = 94/153 (61%), Positives = 122/153 (79%), Gaps = 18/153 (11%)
 Frame = +2

Query: 110 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 274
           MSL+  + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI  KKADID++KR     
Sbjct: 1   MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60

Query: 275 -------------AGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSN 415
                        AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD  DG++SQ+ S+ 
Sbjct: 61  PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNA 120

Query: 416 LDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 514
           LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 153


>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
          Length = 78

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 39/55 (70%), Positives = 46/55 (83%), Gaps = 1/55 (1%)
 Frame = +2

Query: 353 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQH 514
           W L  R+KD  DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRVRGQH
Sbjct: 7   WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 61


>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
          Length = 161

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +2

Query: 431 REDLERLKKIRAHRGMRHYWGLRVRGQ 511
           R  +ERLK+IR +RG+RH  GL VRGQ
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPVRGQ 134


>03_01_0404 + 3138624-3140096
          Length = 490

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 383 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 481
           +G Y QL++  LDS  ++D  R++K+   RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435


>10_07_0063 -
           12502305-12503361,12503567-12503668,12504251-12504378,
           12504653-12504764,12504876-12504927,12505260-12505517,
           12505943-12506079,12506296-12506606
          Length = 718

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 444 RGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVY 554
           RG   + L   C+++  F+C +STL +     ELL++
Sbjct: 184 RGQIEYELYPLCNLSFFFICYLSTLLIFCNANELLLF 220


>01_07_0179 -
           41814886-41815074,41815172-41815222,41815365-41815469,
           41815852-41815945,41816056-41816150,41816581-41816700,
           41816737-41816832,41817272-41817569,41817777-41817853,
           41818932-41819447
          Length = 546

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 441 WRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELL 548
           W+    FA+  G D+   F+ +  T  LLA EE LL
Sbjct: 212 WQEESCFAIGAGTDVANLFISIKRTQLLLATEEWLL 247


>06_03_1275 +
           28903961-28904123,28904225-28904322,28904406-28904550,
           28904690-28904814,28904957-28905049,28905297-28905362,
           28905459-28905524,28905790-28905870,28905947-28906123,
           28906212-28906287,28906394-28906521,28906639-28906950
          Length = 509

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 255 SAFLRTMLEYLRPTPLIAVIANIT 184
           S+FL TM EY+R  P  A +AN T
Sbjct: 255 SSFLGTMEEYIREAPRTAPVANKT 278


>03_01_0646 + 4742398-4742994,4743681-4744085
          Length = 333

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 193 CDDGYQRCWPEVLQHCSQKSR 255
           CDD Y+R W  +L+   ++SR
Sbjct: 296 CDDSYRRAWSRLLRRLVRESR 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,492,033
Number of Sequences: 37544
Number of extensions: 320963
Number of successful extensions: 868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)