Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1a15
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    68   2e-12
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    30   0.31 
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    28   1.7  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     27   2.9  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   6.7  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   6.7  

>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 31/61 (50%), Positives = 39/61 (63%)
 Frame = +3

Query: 573 MGYGLSGDASHITTPREDGSGAMLSMARALKDGNLQKEDITYINAHATSTPIGDGIESTA 752
           +GYGL+ D+ HIT P  +G  A  +M R+LK   L    + YINAHATST +GD  ES A
Sbjct: 266 VGYGLASDSYHITAPNPNGDAAYYAMKRSLKQAGLSASQLDYINAHATSTKLGDVAESIA 325

Query: 753 I 755
           I
Sbjct: 326 I 326



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +3

Query: 390 LAGLIPREKDGIVEKALS---KSTLKSMAPATSLALVATSEALKDANWTPKSEHCKEMTG 560
           +AG+IPR K+      L    +  L+ +A  T LAL + +EALKDA W    E  K  TG
Sbjct: 49  VAGVIPRGKEKEEWNVLDYVDQGKLREVATFTQLALTSAAEALKDARWIDIDEQEKLATG 108

Query: 561 VAIGMGYGLSGDA 599
           V  G G G   DA
Sbjct: 109 VCFGTGIGNLDDA 121


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
 Frame = +3

Query: 42  IATLNFTLNYALLFF--LNLSTSICLWKEISIYFIHKLY 152
           +AT N +L+Y ++ F  LNL  SI +WKE  +YFI  +Y
Sbjct: 415 VAT-NLSLSYLIISFLLLNLKESIHVWKE--LYFIVHIY 450


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 26  ERN*INSNFKFYIKLCIAFFFKPFNFYLFVERNFYLLYP 142
           E N  +SN K Y        F P+ F + + + +Y+ YP
Sbjct: 678 ESNKYSSNLKSYYGCIPNIEFPPWGFKILIPKKYYVRYP 716


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 629 KWSYVVYGESLERWQFAKRRYNIY 700
           K+S  + GE L++W   +RRY ++
Sbjct: 171 KFSSTLVGEVLQKWHLWRRRYELF 194


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 710 MGIYICYIFFL--QIAIFQGSRHRQHSSTSIFSWCSYVRSITRKTISHAYCNTGH 552
           +G+ +  +F+L    ++F+G +  + S  S  S  S    + RKT+   YC   H
Sbjct: 452 IGVVLLGLFYLLHDNSLFKGFKGEKKSKVSTRSSMSPSSILFRKTVFEKYCLLDH 506


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 63  LNYALLFFLNLSTSICLWKEISIYFIHKLYKYNKG 167
           ++YA+L+F+N   S+  W  +S +F  KL K + G
Sbjct: 45  ISYAVLYFVN---SLLSWCMLSSWFNSKLSKLSAG 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,841
Number of Sequences: 5004
Number of extensions: 53827
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)