Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1a15
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80216-9|CAH10778.1|  403|Caenorhabditis elegans Hypothetical pr...    74   1e-13
Z80216-8|CAB02284.2|  261|Caenorhabditis elegans Hypothetical pr...    74   1e-13
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    33   0.22 
U58756-4|AAC48082.1|  291|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z82265-5|CAB05175.1|  334|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U50308-4|AAG24030.2|  483|Caenorhabditis elegans Amino acid tran...    28   8.2  
AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical ...    28   8.2  
AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched relat...    28   8.2  

>Z80216-9|CAH10778.1|  403|Caenorhabditis elegans Hypothetical
           protein F10G8.9b protein.
          Length = 403

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 32/61 (52%), Positives = 45/61 (73%)
 Frame = +3

Query: 573 MGYGLSGDASHITTPREDGSGAMLSMARALKDGNLQKEDITYINAHATSTPIGDGIESTA 752
           +GYG+S D  HI+TP     GA+LSM RA+ + +L+ +DI Y+NAHATSTP GD +E+ A
Sbjct: 247 VGYGISSDCYHISTPDPSAIGAVLSMNRAIGNAHLEPKDIGYVNAHATSTPNGDSVEAEA 306

Query: 753 I 755
           +
Sbjct: 307 V 307


>Z80216-8|CAB02284.2|  261|Caenorhabditis elegans Hypothetical
           protein F10G8.9a protein.
          Length = 261

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 32/61 (52%), Positives = 45/61 (73%)
 Frame = +3

Query: 573 MGYGLSGDASHITTPREDGSGAMLSMARALKDGNLQKEDITYINAHATSTPIGDGIESTA 752
           +GYG+S D  HI+TP     GA+LSM RA+ + +L+ +DI Y+NAHATSTP GD +E+ A
Sbjct: 105 VGYGISSDCYHISTPDPSAIGAVLSMNRAIGNAHLEPKDIGYVNAHATSTPNGDSVEAEA 164

Query: 753 I 755
           +
Sbjct: 165 V 165


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical
           protein C41A3.1 protein.
          Length = 7829

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 567 IGMGYGLSGDASHITTPREDGSGAMLSMARALKDGNLQKEDITYINAHATSTPIGDGIES 746
           +G  +   G    +T P       +     ALK  N+ K+ +  +  H T T +GD +E 
Sbjct: 248 VGSAFNSDGKTPSLTAPNPISQYEV--QLEALK--NIDKDSVQLVTCHGTGTKLGDQVEL 303

Query: 747 TAI 755
           TAI
Sbjct: 304 TAI 306



 Score = 31.9 bits (69), Expect = 0.51
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 672  NLQKEDITYINAHATSTPIGDGIESTAI 755
            N +KE I+++  HAT T +GD IE  ++
Sbjct: 5604 NKEKERISFVECHATGTTLGDTIEMNSL 5631


>U58756-4|AAC48082.1|  291|Caenorhabditis elegans Hypothetical
           protein F58F9.6 protein.
          Length = 291

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 560 CCNRHGIWSFW*CFSHNYTKRRWK 631
           CC + G+WS W  +  NY    W+
Sbjct: 120 CCPKGGLWSSWSGYIRNYASNGWE 143


>Z82265-5|CAB05175.1|  334|Caenorhabditis elegans Hypothetical
           protein F02H6.7 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/51 (23%), Positives = 20/51 (39%)
 Frame = +2

Query: 560 CCNRHGIWSFW*CFSHNYTKRRWKWSYVVYGESLERWQFAKRRYNIYKCPC 712
           CC   G+W+ W  ++HN     W  S              + +   ++CPC
Sbjct: 157 CCPVGGVWTEWTRWAHNGANVEWSRSRDCISGGYNCACIGENQETKFECPC 207


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical
           protein F32H2.5 protein.
          Length = 2586

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +3

Query: 591 GDASH-ITTPREDGSGAMLSMARALKDGNLQKEDITYINAHATSTPIGDGIESTAI 755
           G   H IT P  +    +L       +  +    + Y+ AH T T +GD  E+ AI
Sbjct: 264 GHKEHGITFPSGERQAQLLQ--EVYSEAGIDPNSVYYVEAHGTGTKVGDPQEANAI 317


>Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 48  TLNFTLNYALLFFLNLSTSICLWKEISIYFIHKLYKYNK 164
           +LNF  NYA+L  ++L   + L     IYF H+ YK  K
Sbjct: 371 SLNFFYNYAILPVVSLGIFVVL--GAGIYFGHRKYKEAK 407


>U50308-4|AAG24030.2|  483|Caenorhabditis elegans Amino acid
           transporter protein 2 protein.
          Length = 483

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
 Frame = -3

Query: 703 FIYVISSFCKLPSFKALAIDNIAPLPSSLGVVM*EASPE--RP-YPMPIATPVISLQCSL 533
           + Y+  +F  LPSF  L +  +   P+SL ++    +    +P Y  P+   V++L    
Sbjct: 86  YAYIYEAFGPLPSFLFLWVALVIINPTSLAIIAITCATYALQPFYSCPVPDVVVNLFAGC 145

Query: 532 LGVQLASLSASDV--ATNAND 476
           +   L  ++  DV  AT  ND
Sbjct: 146 IIAVLTFINCWDVRMATRTND 166


>AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 48  TLNFTLNYALLFFLNLSTSICLWKEISIYFIHKLYKYNK 164
           +LNF  NYA+L  ++L   + L     IYF H+ YK  K
Sbjct: 371 SLNFFYNYAILPVVSLGIFVVL--GAGIYFGHRKYKEAK 407


>AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched related
           family protein 11 protein.
          Length = 820

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 383 GDTTPSPVTTTLRLTALIVLILRIKFKYVLYLRIVFI 273
           G  TP+P  +   LTA + L+L   F Y +   IVF+
Sbjct: 361 GFLTPTPQMSLFCLTASLALLLDYIFTYTILAPIVFL 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,953,270
Number of Sequences: 27780
Number of extensions: 292627
Number of successful extensions: 898
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)