Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1a15
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.4  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
 Frame = +2

Query: 626 WKW----SYVVYGESLERWQFAKR 685
           W W    S   YG S +RWQ+A R
Sbjct: 233 WGWLAFNSGSTYGVSGQRWQYAAR 256


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +1

Query: 115 GKKFLFTLSINSINTIKDHIKLNISDRKGIVEP*IISVKLI*YS*VLIRILSKINTMRKY 294
           GK  LFT+ +++ +     + LN+  R          V+      V I +L ++  MR+Y
Sbjct: 304 GKFVLFTMILDTFSICVTVVVLNVHFRSPQTHVMAPWVRR-----VFIHVLPRLLVMRRY 358

Query: 295 NT 300
           NT
Sbjct: 359 NT 360


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 519 NWTPKSEHCKEMTGVAI 569
           +W P+ E C E T  A+
Sbjct: 198 DWQPEDEECTEATAGAV 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,194
Number of Sequences: 438
Number of extensions: 3809
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)