Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1a03
(549 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 118 4e-27
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 118 4e-27
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 100 7e-22
07_03_1414 - 26403361-26403969 28 5.6
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 28 5.6
06_01_0820 + 6202348-6203313 27 7.5
05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033 27 7.5
06_01_0821 + 6210368-6211285 27 9.9
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 118 bits (283), Expect = 4e-27
Identities = 58/120 (48%), Positives = 73/120 (60%)
Frame = +3
Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 369 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 548
K A LFK+L KYRPE +P ++ G N VT L+E
Sbjct: 82 KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 140
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 118 bits (283), Expect = 4e-27
Identities = 58/120 (48%), Positives = 73/120 (60%)
Frame = +3
Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLD
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 369 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 548
K A LFK+L KYRPE +P ++ G N VT L+E
Sbjct: 66 KNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE 124
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 100 bits (240), Expect = 7e-22
Identities = 45/77 (58%), Positives = 58/77 (75%)
Frame = +3
Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
NPLFEKRPK F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLD
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLD 82
Query: 369 KTTAKGLFKILEKYRPE 419
K ++L++ + E
Sbjct: 83 KNLGCQKERLLKRAQAE 99
>07_03_1414 - 26403361-26403969
Length = 202
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 296 LDADILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 159
L A + P + G++ + + +T + L P LEE + GL L+D
Sbjct: 77 LSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 287 PHPASEGCTSASSESAPSDQP 349
P PA E +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>06_01_0820 + 6202348-6203313
Length = 321
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 339 EGALSDDAEVQPSDAGCGYTWAILQIWTSHELAECPDQ 226
EG S V SDAG GY +A W + +CP Q
Sbjct: 170 EGFCSVRCGVHGSDAGAGYAYA----WVGNAERQCPGQ 203
>05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033
Length = 160
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +1
Query: 160 SKRLSPRKL*ILS---SRRGQRTLLLVRAFSQLVTCPD 264
S L PR L +L +RRG R L +VRA S V PD
Sbjct: 13 SPSLGPRSLRLLRGALARRGSRRLGVVRAASAEVAAPD 50
>06_01_0821 + 6210368-6211285
Length = 305
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -1
Query: 339 EGALSDDAEVQPSDAGCGYTWAILQIWTSHELAECPDQ 226
EG S V SDAG GY +A W +CP Q
Sbjct: 154 EGFCSARCGVHGSDAGAGYAYA----WAGDAERQCPGQ 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,596,384
Number of Sequences: 37544
Number of extensions: 245633
Number of successful extensions: 749
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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