Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1a02
         (239 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0C652 Cluster: Chromosome undetermined scaffold_151, w...    31   6.5  
UniRef50_Q5VZL5 Cluster: Zinc finger MYM-type protein 4; n=38; T...    31   6.5  
UniRef50_A7AWS7 Cluster: Putative uncharacterized protein; n=1; ...    30   8.6  
UniRef50_A2D9U9 Cluster: Adaptin N terminal region family protei...    30   8.6  
UniRef50_Q979P0 Cluster: Archaeosine biosynthesis protein queC; ...    30   8.6  
UniRef50_Q9VKA5 Cluster: Putative gustatory receptor 33a; n=3; S...    30   8.6  

>UniRef50_A0C652 Cluster: Chromosome undetermined scaffold_151,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_151,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 529

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +1

Query: 109 WDSAKVKMVLISPGVFSMTIGF 174
           WD  K  +++++PG++ +T+GF
Sbjct: 431 WDKDKPNIIVVAPGIYEITLGF 452


>UniRef50_Q5VZL5 Cluster: Zinc finger MYM-type protein 4; n=38;
           Tetrapoda|Rep: Zinc finger MYM-type protein 4 - Homo
           sapiens (Human)
          Length = 1548

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
 Frame = -1

Query: 227 STYTDFI-KSILAAMALPQKPIVILNTPGEISTILTFALSHDISYHAISFQSI------- 72
           +T  DF  +S L+   L +KPIV +NT   IST  +    + +  H +++Q++       
Sbjct: 411 TTSKDFCSQSCLSTYELKKKPIVTINT-NSISTKCSMCQKNAVIRHEVNYQNVVHKLCSD 469

Query: 71  -CFIFFRKDYNL 39
            CF  FR   NL
Sbjct: 470 ACFSKFRSANNL 481


>UniRef50_A7AWS7 Cluster: Putative uncharacterized protein; n=1;
           Babesia bovis|Rep: Putative uncharacterized protein -
           Babesia bovis
          Length = 1006

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -1

Query: 164 VILNTPGEISTILTFALSHDISYHAISFQSICFIFFRKDY 45
           ++L++P +IS +L  AL H  +++ +SF S+  I  R  +
Sbjct: 827 LLLSSPNDISELLRVALQHIQTHNLLSFASVLTILQRNSH 866


>UniRef50_A2D9U9 Cluster: Adaptin N terminal region family protein;
           n=2; Trichomonas vaginalis G3|Rep: Adaptin N terminal
           region family protein - Trichomonas vaginalis G3
          Length = 774

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -1

Query: 215 DFIKSILAAMALPQKPIVILNTPGEISTILTFALSHDISYHAISFQSICFIFFRKD 48
           DFI S+L A    ++ IVI N   E++ + TF    D+ Y       I F+  R D
Sbjct: 7   DFIISVLNAPTFDEQKIVIAN---ELAAVRTFIRDCDLKYKPSLIAKIMFLGVRGD 59


>UniRef50_Q979P0 Cluster: Archaeosine biosynthesis protein queC;
           n=20; cellular organisms|Rep: Archaeosine biosynthesis
           protein queC - Thermoplasma volcanium
          Length = 241

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -1

Query: 182 LPQKPIVILNTPGEISTILTFALSHDISYHAISF 81
           +P+K +V+L+   + ST+L +AL+     +AISF
Sbjct: 1   MPKKAVVLLSGGLDSSTVLAYALNKGFEVYAISF 34


>UniRef50_Q9VKA5 Cluster: Putative gustatory receptor 33a; n=3;
           Sophophora|Rep: Putative gustatory receptor 33a -
           Drosophila melanogaster (Fruit fly)
          Length = 475

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 120 CTVP*YFISCYLVSIHLFHFLPKRL*SQINQIHLISFHYF 1
           C VP ++++CYL+ I+L H +   L    N +  +S H F
Sbjct: 34  CIVPIFYVACYLL-INLSHIIGLCLLDSCNSVCKLSSHLF 72


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,307,851
Number of Sequences: 1657284
Number of extensions: 3482168
Number of successful extensions: 8496
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8495
length of database: 575,637,011
effective HSP length: 58
effective length of database: 479,514,539
effective search space used: 10069805319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)