Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1a02
         (239 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096...    30   0.30 
10_08_0391 + 17486109-17486210,17487032-17487129,17487331-174873...    26   3.7  
03_01_0064 + 516040-516162,517571-517668,518000-518030,519051-51...    26   3.7  
09_04_0586 - 18736643-18736914,18737085-18737187,18737279-187379...    26   4.9  
04_03_0126 + 11524567-11524967,11525113-11525647,11525669-11526043     25   8.5  
02_05_0064 - 25529630-25531440,25531663-25531673,25533113-255331...    25   8.5  

>04_04_0476 -
           25508952-25509004,25509245-25509326,25509453-25509611,
           25509702-25509767,25509898-25510067,25510172-25510262,
           25510331-25510410,25510887-25511003,25511092-25511218,
           25511685-25511865,25511978-25512366,25512959-25513135,
           25513306-25513500,25513844-25514031,25514192-25514500,
           25514592-25514637
          Length = 809

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 182 LPQKPIVILNTPGEISTILTFALSHDISYHAISF 81
           L +KP +++ TPG +  +++    H I  H++SF
Sbjct: 278 LKRKPEIVVGTPGRLWELMSTGNQHLIKLHSLSF 311


>10_08_0391 +
           17486109-17486210,17487032-17487129,17487331-17487361,
           17487655-17487707,17489254-17489402,17489828-17489898,
           17489988-17490131,17490249-17490309,17492180-17492265,
           17492839-17492926,17494012-17494142,17494266-17494394
          Length = 380

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 230 YSTYTDFIKSIL-AAMALPQKPIVILNTPGEISTILTF 120
           Y T  + ++ I  A + +  KP+ +LN  G  +++LTF
Sbjct: 147 YGTLEELLEVITWAQLGIHHKPVGLLNVDGYYNSLLTF 184


>03_01_0064 +
           516040-516162,517571-517668,518000-518030,519051-519150,
           519750-519820,519981-520124,520541-520609
          Length = 211

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 230 YSTYTDFIKSIL-AAMALPQKPIVILNTPGEISTILTF 120
           Y T  + ++ I  A + +  KP+ +LN  G  +++LTF
Sbjct: 120 YGTLEELLEVITWAQLGIHHKPVGLLNVDGYYNSLLTF 157


>09_04_0586 -
           18736643-18736914,18737085-18737187,18737279-18737900,
           18738376-18738463,18738537-18738614,18738741-18738816,
           18738912-18738970,18739061-18739127,18739268-18739405
          Length = 500

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = -1

Query: 221 YTDFIKSILAAMALPQKPIVILNTPGEISTILTFALSHDISYHAISFQSICF 66
           Y   I  ++A   +P   I   +TP  + +     LS DI    + F  +CF
Sbjct: 129 YNSLINDVIAKGMIPFVTIFHWDTPLALESKYGGFLSEDIVKEYVDFAEVCF 180


>04_03_0126 + 11524567-11524967,11525113-11525647,11525669-11526043
          Length = 436

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -1

Query: 182 LPQKPIVILNTPGEISTILTFALSHDISYHAISF 81
           LP   I +++TP  ++ +   A +  + +HA+ F
Sbjct: 32  LPHATITLVSTPRNVAALRAAAAAPFLDFHALRF 65


>02_05_0064 -
           25529630-25531440,25531663-25531673,25533113-25533198,
           25533412-25534259,25535385-25535736
          Length = 1035

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 173 KPIVILNTPGEISTI 129
           KPI+++ TPG IS I
Sbjct: 724 KPIIVVGTPGRISEI 738


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,703,357
Number of Sequences: 37544
Number of extensions: 88184
Number of successful extensions: 186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)