Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1a02
(239 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical pr... 29 0.58
Z82078-8|CAB04948.2| 947|Caenorhabditis elegans Hypothetical pr... 29 0.58
AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical... 29 0.58
AL023844-12|CAA19535.2| 947|Caenorhabditis elegans Hypothetical... 29 0.58
Z27078-9|CAA81586.2| 378|Caenorhabditis elegans Hypothetical pr... 28 0.77
Z27078-4|CAB76843.1| 373|Caenorhabditis elegans Hypothetical pr... 28 0.77
Z19153-8|CAD45582.1| 378|Caenorhabditis elegans Hypothetical pr... 28 0.77
AY303580-1|AAP57302.1| 373|Caenorhabditis elegans cell death-re... 28 0.77
AF220525-1|AAF43008.1| 352|Caenorhabditis elegans DNAse II homo... 26 3.1
AC006677-9|AAF39947.1| 344|Caenorhabditis elegans Serpentine re... 26 4.1
Z81484-6|CAB03968.2| 314|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z29094-15|CAA82341.3| 672|Caenorhabditis elegans Hypothetical p... 25 7.2
U97403-1|AAB52468.1| 237|Caenorhabditis elegans Hypothetical pr... 25 7.2
EF445112-1|ABQ01579.1| 265|Caenorhabditis elegans scramblase 4 ... 25 9.5
AF478687-1|AAL78657.1| 776|Caenorhabditis elegans systemic RNAi... 25 9.5
AF101305-9|AAF98593.3| 776|Caenorhabditis elegans Systemic rna ... 25 9.5
>Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 28.7 bits (61), Expect = 0.58
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -1
Query: 209 IKSILAAM-ALPQKPIVILNTPGEISTILTF-ALSHDISYHAISFQSICFIFFR 54
++ +LA + A PQ+P V L+ +STI F ++ + IS H S +++ F R
Sbjct: 479 VEPVLAEVSAEPQRPPVTLSMTAPVSTIAEFDSMLNSISLHNESLETVAEPFSR 532
>Z82078-8|CAB04948.2| 947|Caenorhabditis elegans Hypothetical
protein Y48A6B.11a protein.
Length = 947
Score = 28.7 bits (61), Expect = 0.58
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -1
Query: 209 IKSILAAM-ALPQKPIVILNTPGEISTILTF-ALSHDISYHAISFQSICFIFFR 54
++ +LA + A PQ+P V L+ +STI F ++ + IS H S +++ F R
Sbjct: 477 VEPVLAEVSAEPQRPPVTLSMTAPVSTIAEFDSMLNSISLHNESLETVAEPFSR 530
>AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 28.7 bits (61), Expect = 0.58
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -1
Query: 209 IKSILAAM-ALPQKPIVILNTPGEISTILTF-ALSHDISYHAISFQSICFIFFR 54
++ +LA + A PQ+P V L+ +STI F ++ + IS H S +++ F R
Sbjct: 479 VEPVLAEVSAEPQRPPVTLSMTAPVSTIAEFDSMLNSISLHNESLETVAEPFSR 532
>AL023844-12|CAA19535.2| 947|Caenorhabditis elegans Hypothetical
protein Y48A6B.11a protein.
Length = 947
Score = 28.7 bits (61), Expect = 0.58
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -1
Query: 209 IKSILAAM-ALPQKPIVILNTPGEISTILTF-ALSHDISYHAISFQSICFIFFR 54
++ +LA + A PQ+P V L+ +STI F ++ + IS H S +++ F R
Sbjct: 477 VEPVLAEVSAEPQRPPVTLSMTAPVSTIAEFDSMLNSISLHNESLETVAEPFSR 530
>Z27078-9|CAA81586.2| 378|Caenorhabditis elegans Hypothetical
protein K04H4.6b protein.
Length = 378
Score = 28.3 bits (60), Expect = 0.77
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 102 NIMGQCKSQNGANFSWCIQYDYWLLW 179
N QCK NG+N W + Y LW
Sbjct: 16 NAAYQCKDNNGSNVDWFVFYKLPHLW 41
>Z27078-4|CAB76843.1| 373|Caenorhabditis elegans Hypothetical
protein K04H4.6a protein.
Length = 373
Score = 28.3 bits (60), Expect = 0.77
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 102 NIMGQCKSQNGANFSWCIQYDYWLLW 179
N QCK NG+N W + Y LW
Sbjct: 16 NAAYQCKDNNGSNVDWFVFYKLPHLW 41
>Z19153-8|CAD45582.1| 378|Caenorhabditis elegans Hypothetical
protein K04H4.6b protein.
Length = 378
Score = 28.3 bits (60), Expect = 0.77
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 102 NIMGQCKSQNGANFSWCIQYDYWLLW 179
N QCK NG+N W + Y LW
Sbjct: 16 NAAYQCKDNNGSNVDWFVFYKLPHLW 41
>AY303580-1|AAP57302.1| 373|Caenorhabditis elegans cell
death-related nuclease 6 protein.
Length = 373
Score = 28.3 bits (60), Expect = 0.77
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 102 NIMGQCKSQNGANFSWCIQYDYWLLW 179
N QCK NG+N W + Y LW
Sbjct: 16 NAAYQCKDNNGSNVDWFVFYKLPHLW 41
>AF220525-1|AAF43008.1| 352|Caenorhabditis elegans DNAse II homolog
K04H4.6 protein.
Length = 352
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 114 QCKSQNGANFSWCIQYDYWLLW 179
QCK NG+N W + Y W
Sbjct: 3 QCKDNNGSNVDWFVFYKLPHFW 24
>AC006677-9|AAF39947.1| 344|Caenorhabditis elegans Serpentine
receptor, class h protein56 protein.
Length = 344
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 236 FFYSTYTDFIKSILAAMALPQKPIVILNTP 147
F Y Y DF KS++ Q+ + I+ P
Sbjct: 305 FIYKPYRDFTKSLIPGQRFSQRRMTIIVEP 334
>Z81484-6|CAB03968.2| 314|Caenorhabditis elegans Hypothetical
protein C47A10.3 protein.
Length = 314
Score = 25.0 bits (52), Expect = 7.2
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -1
Query: 215 DFIKSILAAMALPQKPIVILNTPGEISTILTFALSHDISYHAISFQSICFIF 60
DF++++ + +P IVIL P I+TIL H + I ICFIF
Sbjct: 235 DFLRALKLQILIP---IVILIIPAIINTILEVNNFHIQGINCI----ICFIF 279
>Z29094-15|CAA82341.3| 672|Caenorhabditis elegans Hypothetical
protein C07A9.11 protein.
Length = 672
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -1
Query: 164 VILNTPGEISTILTFALSHDISYH--AISFQSICFIFFRK 51
+IL +P ++ F+ D+ ++ A+SF + CF+F+ +
Sbjct: 182 IILTSPFDVEV---FSTIRDLLFYLVALSFLAFCFVFYNR 218
>U97403-1|AAB52468.1| 237|Caenorhabditis elegans Hypothetical
protein T10E9.5 protein.
Length = 237
Score = 25.0 bits (52), Expect = 7.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 115 CPMIFHIMLSRFNPFV 68
CP+I+H++ F PF+
Sbjct: 26 CPLIYHLLKKFFPPFI 41
>EF445112-1|ABQ01579.1| 265|Caenorhabditis elegans scramblase 4
protein.
Length = 265
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/34 (26%), Positives = 15/34 (44%)
Frame = -1
Query: 140 ISTILTFALSHDISYHAISFQSICFIFFRKDYNL 39
++ L F HD+ I +CF+ F+ L
Sbjct: 229 VNNFLEFQQIHDVDESTIGCGGLCFLMFKTSMQL 262
>AF478687-1|AAL78657.1| 776|Caenorhabditis elegans systemic RNAi
enabling proteinSID-1 protein.
Length = 776
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 239 FFFYSTYTDFIKSILAAMALPQKPIVIL 156
FFF+ TD+ +S A+ AL KP ++L
Sbjct: 708 FFFFQDDTDWTRSAAASRAL-NKPCLLL 734
>AF101305-9|AAF98593.3| 776|Caenorhabditis elegans Systemic rna
interference defectiveprotein 1 protein.
Length = 776
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 239 FFFYSTYTDFIKSILAAMALPQKPIVIL 156
FFF+ TD+ +S A+ AL KP ++L
Sbjct: 708 FFFFQDDTDWTRSAAASRAL-NKPCLLL 734
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,327,803
Number of Sequences: 27780
Number of extensions: 89228
Number of successful extensions: 226
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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