Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19p21
(552 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-2306|AAM68504.1| 147|Drosophila melanogaster CG8332-PB... 264 4e-71
AY070991-1|AAL48613.1| 148|Drosophila melanogaster RE08270p pro... 263 1e-70
AE013599-2305|AAF57984.1| 148|Drosophila melanogaster CG8332-PA... 263 1e-70
AY058318-1|AAL13547.1| 872|Drosophila melanogaster GH08353p pro... 31 1.4
AE014296-3271|AAF49077.2| 872|Drosophila melanogaster CG14183-P... 31 1.4
AY119656-1|AAM50310.1| 460|Drosophila melanogaster SD02418p pro... 28 9.7
AJ010073-1|CAB45234.1| 614|Drosophila melanogaster XRCC1 protei... 28 9.7
AF132142-1|AAD33589.1| 614|Drosophila melanogaster DNA repair p... 28 9.7
AE014298-727|AAF46025.1| 614|Drosophila melanogaster CG4208-PA ... 28 9.7
AE014296-1211|AAF50597.1| 460|Drosophila melanogaster CG8616-PA... 28 9.7
>AE013599-2306|AAM68504.1| 147|Drosophila melanogaster CG8332-PB,
isoform B protein.
Length = 147
Score = 264 bits (648), Expect = 4e-71
Identities = 121/147 (82%), Positives = 131/147 (89%)
Frame = +1
Query: 25 MAEVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVK 204
M +VDE LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH GLKRKPMAL+K
Sbjct: 1 MQQVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIK 60
Query: 205 KLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGE 384
KLR+AKKEAPPNEKPEIVKTHLRNMIIVPEM GSI+G+YNGK F QVE+KPEMIGHYLGE
Sbjct: 61 KLRKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGE 120
Query: 385 FSVTYKPVKHGRPGIGATHSSRFIPLK 465
F++TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 FALTYKPVKHGRPGIGATHSSRFIPLK 147
>AY070991-1|AAL48613.1| 148|Drosophila melanogaster RE08270p
protein.
Length = 148
Score = 263 bits (644), Expect = 1e-70
Identities = 120/145 (82%), Positives = 130/145 (89%)
Frame = +1
Query: 31 EVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKL 210
+VDE LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH GLKRKPMAL+KKL
Sbjct: 4 QVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKL 63
Query: 211 RRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFS 390
R+AKKEAPPNEKPEIVKTHLRNMIIVPEM GSI+G+YNGK F QVE+KPEMIGHYLGEF+
Sbjct: 64 RKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFA 123
Query: 391 VTYKPVKHGRPGIGATHSSRFIPLK 465
+TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 124 LTYKPVKHGRPGIGATHSSRFIPLK 148
>AE013599-2305|AAF57984.1| 148|Drosophila melanogaster CG8332-PA,
isoform A protein.
Length = 148
Score = 263 bits (644), Expect = 1e-70
Identities = 120/145 (82%), Positives = 130/145 (89%)
Frame = +1
Query: 31 EVDETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKL 210
+VDE LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH GLKRKPMAL+KKL
Sbjct: 4 QVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKL 63
Query: 211 RRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFS 390
R+AKKEAPPNEKPEIVKTHLRNMIIVPEM GSI+G+YNGK F QVE+KPEMIGHYLGEF+
Sbjct: 64 RKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFA 123
Query: 391 VTYKPVKHGRPGIGATHSSRFIPLK 465
+TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 124 LTYKPVKHGRPGIGATHSSRFIPLK 148
>AY058318-1|AAL13547.1| 872|Drosophila melanogaster GH08353p
protein.
Length = 872
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 196 LVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 324
L+KK R KK PP EK K + ++ E+V + IY+
Sbjct: 20 LIKKQNRLKKIEPPEEKAVSYKIYAELYVLYVELVNKLSFIYH 62
>AE014296-3271|AAF49077.2| 872|Drosophila melanogaster CG14183-PA
protein.
Length = 872
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 196 LVKKLRRAKKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 324
L+KK R KK PP EK K + ++ E+V + IY+
Sbjct: 20 LIKKQNRLKKIEPPEEKAVSYKIYAELYVLYVELVNKLSFIYH 62
>AY119656-1|AAM50310.1| 460|Drosophila melanogaster SD02418p
protein.
Length = 460
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 294 LGNDDHV-SQVSLHDLWLLIRRSLFLGATQLLDQCHWFTFKTTSEPPAR 151
L ++H+ +Q+ H WLL+ S FL W +++ PPA+
Sbjct: 201 LTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRPPAQ 249
>AJ010073-1|CAB45234.1| 614|Drosophila melanogaster XRCC1 protein
protein.
Length = 614
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 201 QEAASRQERGSSE*EARDREDSLEKHDHRSRD 296
+E ++ER S+ E + R KHDHRS D
Sbjct: 349 KEQLRKEERSHSK-EEKSRRKEKSKHDHRSSD 379
>AF132142-1|AAD33589.1| 614|Drosophila melanogaster DNA repair
protein XRCC1 protein.
Length = 614
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 201 QEAASRQERGSSE*EARDREDSLEKHDHRSRD 296
+E ++ER S+ E + R KHDHRS D
Sbjct: 349 KEQLRKEERSHSK-EEKSRRKEKSKHDHRSSD 379
>AE014298-727|AAF46025.1| 614|Drosophila melanogaster CG4208-PA
protein.
Length = 614
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 201 QEAASRQERGSSE*EARDREDSLEKHDHRSRD 296
+E ++ER S+ E + R KHDHRS D
Sbjct: 349 KEQLRKEERSHSK-EEKSRRKEKSKHDHRSSD 379
>AE014296-1211|AAF50597.1| 460|Drosophila melanogaster CG8616-PA
protein.
Length = 460
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 294 LGNDDHV-SQVSLHDLWLLIRRSLFLGATQLLDQCHWFTFKTTSEPPAR 151
L ++H+ +Q+ H WLL+ S FL W +++ PPA+
Sbjct: 201 LTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRPPAQ 249
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,377,698
Number of Sequences: 53049
Number of extensions: 431883
Number of successful extensions: 1271
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2110522698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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