Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19p18
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    28   1.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.6  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        25   7.4  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   9.7  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +1

Query: 436 IESACHDIQYPAIAKICKDNTAHFENYIHHVLKSNTSAETMCKIVGMCNNMKLDN 600
           I++AC   Q+  + +IC+DN  +    + ++LK    A+ +  ++ +C+     N
Sbjct: 729 IQAACLMNQFTEVERICRDNNVYNPEKVKNLLKEAKLADQL-PLILVCDRYDFVN 782


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 337  PAFVSPTQSPYSVQPRRIQPP 275
            P    P QSP  VQP   QPP
Sbjct: 1031 PMAADPFQSPLYVQPTGFQPP 1051


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 105 WLSKY*NLNNSVLILLRID*YQNVKSPLSVTKFT 4
           W  +  ++N S   ++++D Y N+KS LS  K T
Sbjct: 386 WNWELGSVNESEYTVVKVDFYNNIKSYLSEVKNT 419


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
            complex subunit Tpr1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1039

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 313  TVWEKQKPDVSDNEISSKFVKLF 381
            T+ EKQ  D++DN+  +K + LF
Sbjct: 1011 TIEEKQDNDITDNQDDNKELNLF 1033


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,156
Number of Sequences: 5004
Number of extensions: 59988
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)